Author Report for: Nekrutenko A No contact information in database for Nekrutenko A
Title: Genome sequence of the Brown Norway rat yields insights into mammalian evolutionGibbs RA , Weinstock GM , Metzker ML , Muzny DM , Sodergren EJ , Scherer S , Scott G , Steffen D , Worley KC and Collins F <218 more author(s)> Gibbs RA , Weinstock GM , Metzker ML , Muzny DM , Sodergren EJ , Scherer S , Scott G , Steffen D , Worley KC , Burch PE , Okwuonu G , Hines S , Lewis L , DeRamo C , Delgado O , Dugan-Rocha S , Miner G , Morgan M , Hawes A , Gill R , Celera , Holt RA , Adams MD , Amanatides PG , Baden-Tillson H , Barnstead M , Chin S , Evans CA , Ferriera S , Fosler C , Glodek A , Gu Z , Jennings D , Kraft CL , Nguyen T , Pfannkoch CM , Sitter C , Sutton GG , Venter JC , Woodage T , Smith D , Lee HM , Gustafson E , Cahill P , Kana A , Doucette-Stamm L , Weinstock K , Fechtel K , Weiss RB , Dunn DM , Green ED , Blakesley RW , Bouffard GG , de Jong PJ , Osoegawa K , Zhu B , Marra M , Schein J , Bosdet I , Fjell C , Jones S , Krzywinski M , Mathewson C , Siddiqui A , Wye N , McPherson J , Zhao S , Fraser CM , Shetty J , Shatsman S , Geer K , Chen Y , Abramzon S , Nierman WC , Havlak PH , Chen R , Durbin KJ , Egan A , Ren Y , Song XZ , Li B , Liu Y , Qin X , Cawley S , Cooney AJ , D'Souza LM , Martin K , Wu JQ , Gonzalez-Garay ML , Jackson AR , Kalafus KJ , McLeod MP , Milosavljevic A , Virk D , Volkov A , Wheeler DA , Zhang Z , Bailey JA , Eichler EE , Tuzun E , Birney E , Mongin E , Ureta-Vidal A , Woodwark C , Zdobnov E , Bork P , Suyama M , Torrents D , Alexandersson M , Trask BJ , Young JM , Huang H , Wang H , Xing H , Daniels S , Gietzen D , Schmidt J , Stevens K , Vitt U , Wingrove J , Camara F , Mar Alba M , Abril JF , Guigo R , Smit A , Dubchak I , Rubin EM , Couronne O , Poliakov A , Hubner N , Ganten D , Goesele C , Hummel O , Kreitler T , Lee YA , Monti J , Schulz H , Zimdahl H , Himmelbauer H , Lehrach H , Jacob HJ , Bromberg S , Gullings-Handley J , Jensen-Seaman MI , Kwitek AE , Lazar J , Pasko D , Tonellato PJ , Twigger S , Ponting CP , Duarte JM , Rice S , Goodstadt L , Beatson SA , Emes RD , Winter EE , Webber C , Brandt P , Nyakatura G , Adetobi M , Chiaromonte F , Elnitski L , Eswara P , Hardison RC , Hou M , Kolbe D , Makova K , Miller W , Nekrutenko A , Riemer C , Schwartz S , Taylor J , Yang S , Zhang Y , Lindpaintner K , Andrews TD , Caccamo M , Clamp M , Clarke L , Curwen V , Durbin R , Eyras E , Searle SM , Cooper GM , Batzoglou S , Brudno M , Sidow A , Stone EA , Payseur BA , Bourque G , Lopez-Otin C , Puente XS , Chakrabarti K , Chatterji S , Dewey C , Pachter L , Bray N , Yap VB , Caspi A , Tesler G , Pevzner PA , Haussler D , Roskin KM , Baertsch R , Clawson H , Furey TS , Hinrichs AS , Karolchik D , Kent WJ , Rosenbloom KR , Trumbower H , Weirauch M , Cooper DN , Stenson PD , Ma B , Brent M , Arumugam M , Shteynberg D , Copley RR , Taylor MS , Riethman H , Mudunuri U , Peterson J , Guyer M , Felsenfeld A , Old S , Mockrin S , Collins F (- 218) Ref: Nature, 428 :493, 2004 : PubMed Abstract ESTHER: Gibbs_2004_Nature_428_493 PubMedSearch: Gibbs 2004 Nature 428 493 PubMedID: 15057822 Gene_locus related to this paper: rat-abhea ,
rat-abheb ,
rat-cd029 ,
rat-d3zaw4 ,
rat-dpp9 ,
rat-d3zhq1 ,
rat-d3zkp8 ,
rat-d3zuq1 ,
rat-d3zxw8 ,
rat-d4a4w4 ,
rat-d4a7w1 ,
rat-d4a9l7 ,
rat-d4a071 ,
rat-d4aa31 ,
rat-d4aa33 ,
rat-d4aa61 ,
rat-dglb ,
rat-f1lz91 ,
rat-Kansl3 ,
rat-nceh1 ,
rat-Tex30 ,
ratno-1hlip ,
ratno-1neur ,
ratno-1plip ,
ratno-2neur ,
ratno-3neur ,
ratno-3plip ,
ratno-ABH15 ,
ratno-ACHE ,
ratno-balip ,
ratno-BCHE ,
ratno-cauxin ,
ratno-Ces1d ,
ratno-Ces1e ,
ratno-Ces2f ,
ratno-d3ze31 ,
ratno-d3zp14 ,
ratno-d3zxi3 ,
ratno-d3zxq0 ,
ratno-d3zxq1 ,
ratno-d4a3d4 ,
ratno-d4aa05 ,
ratno-dpp4 ,
ratno-dpp6 ,
ratno-est8 ,
ratno-FAP ,
ratno-hyep ,
ratno-hyes ,
ratno-kmcxe ,
ratno-lmcxe ,
ratno-LOC246252 ,
ratno-MGLL ,
ratno-pbcxe ,
ratno-phebest ,
ratno-Ppgb ,
ratno-q4qr68 ,
ratno-q6ayr2 ,
ratno-q6q629 ,
ratno-SPG21 ,
ratno-thyro ,
rat-m0rc77 ,
rat-a0a0g2k9y7 ,
rat-a0a0g2kb83 ,
rat-d3zba8 ,
rat-d3zbj1 ,
rat-d3zcr8 ,
rat-d3zxw5 ,
rat-d4a340 ,
rat-f1lvg7 ,
rat-m0r509 ,
rat-m0r5d4 ,
rat-b5den3 ,
rat-d3zxk4 ,
rat-d4a1b6 ,
rat-d3zmg4 ,
rat-ab17c Abstract
The laboratory rat (Rattus norvegicus) is an indispensable tool in experimental medicine and drug development, having made inestimable contributions to human health. We report here the genome sequence of the Brown Norway (BN) rat strain. The sequence represents a high-quality 'draft' covering over 90% of the genome. The BN rat sequence is the third complete mammalian genome to be deciphered, and three-way comparisons with the human and mouse genomes resolve details of mammalian evolution. This first comprehensive analysis includes genes and proteins and their relation to human disease, repeated sequences, comparative genome-wide studies of mammalian orthologous chromosomal regions and rearrangement breakpoints, reconstruction of ancestral karyotypes and the events leading to existing species, rates of variation, and lineage-specific and lineage-independent evolutionary events such as expansion of gene families, orthology relations and protein evolution.
Title: Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolutionHillier LW , Miller W , Birney E , Warren W , Hardison RC , Ponting CP , Bork P , Burt DW , Groenen MA and Wilson RK <164 more author(s)> Hillier LW , Miller W , Birney E , Warren W , Hardison RC , Ponting CP , Bork P , Burt DW , Groenen MA , Delany ME , Dodgson JB , Chinwalla AT , Cliften PF , Clifton SW , Delehaunty KD , Fronick C , Fulton RS , Graves TA , Kremitzki C , Layman D , Magrini V , McPherson JD , Miner TL , Minx P , Nash WE , Nhan MN , Nelson JO , Oddy LG , Pohl CS , Randall-Maher J , Smith SM , Wallis JW , Yang SP , Romanov MN , Rondelli CM , Paton B , Smith J , Morrice D , Daniels L , Tempest HG , Robertson L , Masabanda JS , Griffin DK , Vignal A , Fillon V , Jacobbson L , Kerje S , Andersson L , Crooijmans RP , Aerts J , van der Poel JJ , Ellegren H , Caldwell RB , Hubbard SJ , Grafham DV , Kierzek AM , McLaren SR , Overton IM , Arakawa H , Beattie KJ , Bezzubov Y , Boardman PE , Bonfield JK , Croning MD , Davies RM , Francis MD , Humphray SJ , Scott CE , Taylor RG , Tickle C , Brown WR , Rogers J , Buerstedde JM , Wilson SA , Stubbs L , Ovcharenko I , Gordon L , Lucas S , Miller MM , Inoko H , Shiina T , Kaufman J , Salomonsen J , Skjoedt K , Ka-Shu Wong G , Wang J , Liu B , Yu J , Yang H , Nefedov M , Koriabine M , deJong PJ , Goodstadt L , Webber C , Dickens NJ , Letunic I , Suyama M , Torrents D , von Mering C , Zdobnov EM , Makova K , Nekrutenko A , Elnitski L , Eswara P , King DC , Yang S , Tyekucheva S , Radakrishnan A , Harris RS , Chiaromonte F , Taylor J , He J , Rijnkels M , Griffiths-Jones S , Ureta-Vidal A , Hoffman MM , Severin J , Searle SM , Law AS , Speed D , Waddington D , Cheng Z , Tuzun E , Eichler E , Bao Z , Flicek P , Shteynberg DD , Brent MR , Bye JM , Huckle EJ , Chatterji S , Dewey C , Pachter L , Kouranov A , Mourelatos Z , Hatzigeorgiou AG , Paterson AH , Ivarie R , Brandstrom M , Axelsson E , Backstrom N , Berlin S , Webster MT , Pourquie O , Reymond A , Ucla C , Antonarakis SE , Long M , Emerson JJ , Betran E , Dupanloup I , Kaessmann H , Hinrichs AS , Bejerano G , Furey TS , Harte RA , Raney B , Siepel A , Kent WJ , Haussler D , Eyras E , Castelo R , Abril JF , Castellano S , Camara F , Parra G , Guigo R , Bourque G , Tesler G , Pevzner PA , Smit A , Fulton LA , Mardis ER , Wilson RK (- 164) Ref: Nature, 432 :695, 2004 : PubMed Abstract ESTHER: Hillier_2004_Nature_432_695 PubMedSearch: Hillier 2004 Nature 432 695 PubMedID: 15592404 Gene_locus related to this paper: chick-a0a1d5pmd9 ,
chick-b3tzb3 ,
chick-BCHE ,
chick-cb043 ,
chick-d3wgl5 ,
chick-e1bsm0 ,
chick-e1bvq6 ,
chick-e1bwz0 ,
chick-e1bwz1 ,
chick-e1byn1 ,
chick-e1bz81 ,
chick-e1c0z8 ,
chick-e1c7p7 ,
chick-f1nby4 ,
chick-f1ncz8 ,
chick-f1ndp3 ,
chick-f1nep4 ,
chick-f1nj68 ,
chick-f1njg6 ,
chick-f1njk4 ,
chick-f1njs4 ,
chick-f1njs5 ,
chick-f1nk87 ,
chick-f1nmx9 ,
chick-f1ntp8 ,
chick-f1nvg7 ,
chick-f1nwf2 ,
chick-f1p1l1 ,
chick-f1p3j5 ,
chick-f1p4c6 ,
chick-f1p508 ,
chick-fas ,
chick-h9l0k6 ,
chick-nlgn1 ,
chick-NLGN3 ,
chick-q5f3h8 ,
chick-q5zhm0 ,
chick-q5zi81 ,
chick-q5zij5 ,
chick-q5zin0 ,
chick-thyro ,
chick-f1nrq2 ,
chick-e1byd4 ,
chick-e1c2h6 ,
chick-a0a1d5pk92 ,
chick-a0a1d5pzg7 ,
chick-f1nbc2 ,
chick-f1nf25 ,
chick-f1nly5 ,
chick-f1p4h5 ,
chick-f1nzi7 ,
chick-f1p5k3 ,
chick-f1nm35 ,
chick-a0a1d5pl11 ,
chick-a0a1d5pj73 ,
chick-f1nxu6 ,
chick-a0a1d5nwc0 ,
chick-e1bxs8 ,
chick-f1p2g7 ,
chick-f1nd96 Abstract
We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the chicken is a modern descendant of the dinosaurs and the first non-mammalian amniote to have its genome sequenced, the draft sequence of its genome--composed of approximately one billion base pairs of sequence and an estimated 20,000-23,000 genes--provides a new perspective on vertebrate genome evolution, while also improving the annotation of mammalian genomes. For example, the evolutionary distance between chicken and human provides high specificity in detecting functional elements, both non-coding and coding. Notably, many conserved non-coding sequences are far from genes and cannot be assigned to defined functional classes. In coding regions the evolutionary dynamics of protein domains and orthologous groups illustrate processes that distinguish the lineages leading to birds and mammals. The distinctive properties of avian microchromosomes, together with the inferred patterns of conserved synteny, provide additional insights into vertebrate chromosome architecture.
