Title : Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34 - Anderson_2016_Stand.Genomic.Sci_11_70 |
Author(s) : Anderson IJ , DasSarma P , Lucas S , Copeland A , Lapidus A , Del Rio TG , Tice H , Dalin E , Bruce DC , Goodwin L , Pitluck S , Sims D , Brettin TS , Detter JC , Han CS , Larimer F , Hauser L , Land M , Ivanova N , Richardson P , Cavicchioli R , DasSarma S , Woese CR , Kyrpides NC |
Ref : Stand Genomic Sci , 11 :70 , 2016 |
Abstract : |
PubMedSearch : Anderson_2016_Stand.Genomic.Sci_11_70 |
PubMedID: 27617060 |
Gene_locus related to this paper: hallt-metxa |
Title : Draft Genome Sequence of Enterobacter cloacae Strain S611 - Wang_2014_Genome.Announc_2_ |
Author(s) : Wang D , Han CS , Dichosa AE , Gleasner CD , Johnson SL , Daligault HE , Davenport KW , Li PE , Pierson EA , Pierson LS, 3rd |
Ref : Genome Announc , 2 : , 2014 |
Abstract : |
PubMedSearch : Wang_2014_Genome.Announc_2_ |
PubMedID: 25502660 |
Gene_locus related to this paper: entcl-v5ata3 |
Title : Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing - Shih_2013_Proc.Natl.Acad.Sci.U.S.A_110_1053 |
Author(s) : Shih PM , Wu D , Latifi A , Axen SD , Fewer DP , Talla E , Calteau A , Cai F , Tandeau de Marsac N , Rippka R , Herdman M , Sivonen K , Coursin T , Laurent T , Goodwin L , Nolan M , Davenport KW , Han CS , Rubin EM , Eisen JA , Woyke T , Gugger M , Kerfeld CA |
Ref : Proc Natl Acad Sci U S A , 110 :1053 , 2013 |
Abstract : |
PubMedSearch : Shih_2013_Proc.Natl.Acad.Sci.U.S.A_110_1053 |
PubMedID: 23277585 |
Gene_locus related to this paper: 9cyan-k9et81 , cyagp-k9p8h6 , noss7-k9r280 , cyaap-k9z9m7 , synp3-k9ryw0 , anacc-k9zr49 , 9chro-l8lle9 , 9cyan-l8m3q8 , 9cyan-l8mv15 , stac7-k9xpe1 , 9cyan-k9f0z6 , synp3-k9rq00 , noss7-k9qm01 , stac7-k9xsv0 |
Title : Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin - Murugapiran_2013_Genome.Announc_1_e00106 |
Author(s) : Murugapiran SK , Huntemann M , Wei CL , Han J , Detter JC , Han CS , Erkkila TH , Teshima H , Chen A , Kyrpides N , Mavrommatis K , Markowitz V , Szeto E , Ivanova N , Pagani I , Lam J , McDonald AI , Dodsworth JA , Pati A , Goodwin L , Peters L , Pitluck S , Woyke T , Hedlund BP |
Ref : Genome Announc , 1 : , 2013 |
Abstract : |
PubMedSearch : Murugapiran_2013_Genome.Announc_1_e00106 |
PubMedID: 23405355 |
Gene_locus related to this paper: thet2-q72hz1 , thet2-q72j75 , theth-TTC1787 , theos-k7r7w9 , theos-k7r725 , theth-h9zpz9 , theos-k7riw9 , theos-k7qw42 , theos-k7r3i4 |
Title : Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome - Fitzsimons_2013_Genome.Res_23_878 |
Author(s) : Fitzsimons MS , Novotny M , Lo CC , Dichosa AE , Yee-Greenbaum JL , Snook JP , Gu W , Chertkov O , Davenport KW , McMurry K , Reitenga KG , Daughton AR , He J , Johnson SL , Gleasner CD , Wills PL , Parson-Quintana B , Chain PS , Detter JC , Lasken RS , Han CS |
Ref : Genome Res , 23 :878 , 2013 |
Abstract : |
PubMedSearch : Fitzsimons_2013_Genome.Res_23_878 |
PubMedID: 23493677 |
Gene_locus related to this paper: 9stre-k0zi65 |
Title : Draft Genome Sequence of Pseudomonas putida Strain S610, a Seed-Borne Bacterium of Wheat - Wang_2013_Genome.Announc_1_e01048 |
Author(s) : Wang D , Han CS , Dichosa AE , Gleasner CD , Johnson SL , Daligault HE , Davenport KW , Li PE , Pierson EA , Pierson LS, 3rd |
Ref : Genome Announc , 1 : , 2013 |
Abstract : |
PubMedSearch : Wang_2013_Genome.Announc_1_e01048 |
PubMedID: 24371199 |
Gene_locus related to this paper: psepu-PIP , psepu-v6jk66 , psepu-v6j3y1 |
Title : Complete Genome Sequence of Bacillus thuringiensis Serovar Israelensis Strain HD-789 - Doggett_2013_Genome.Announc_1_e01023 |
Author(s) : Doggett NA , Stubben CJ , Chertkov O , Bruce DC , Detter JC , Johnson SL , Han CS |
Ref : Genome Announc , 1 : , 2013 |
Abstract : |
PubMedSearch : Doggett_2013_Genome.Announc_1_e01023 |
PubMedID: 24309743 |
Gene_locus related to this paper: bacce-BC2171 , bacce-BC2337 , bacce-BC4102 |
Title : Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens - Aylward_2013_Genome.Announc_1_E00238 |
Author(s) : Aylward FO , Tremmel DM , Bruce DC , Chain P , Chen A , Walston Davenport K , Detter C , Han CS , Han J , Huntemann M , Ivanova NN , Kyrpides NC , Markowitz V , Mavrommatis K , Nolan M , Pagani I , Pati A , Pitluck S , Deshpande S , Goodwin L , Woyke T , Currie CR |
Ref : Genome Announc , 1 : , 2013 |
Abstract : |
PubMedSearch : Aylward_2013_Genome.Announc_1_E00238 |
PubMedID: 23469353 |
Gene_locus related to this paper: entbf-l0m2y4 , ecolx-e0qx45 , entbf-l0lyj5 , entbf-l0m5k3 , entbf-l0m5q3 |
Title : Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens - Aylward_2013_Genome.Announc_1_e0023912 |
Author(s) : Aylward FO , Tremmel DM , Starrett GJ , Bruce DC , Chain P , Chen A , Davenport KW , Detter C , Han CS , Han J , Huntemann M , Ivanova NN , Kyrpides NC , Markowitz V , Mavrommatis K , Nolan M , Pagani I , Pati A , Pitluck S , Teshima H , Deshpande S , Goodwin L , Woyke T , Currie CR |
Ref : Genome Announc , 1 :e0023912 , 2013 |
Abstract : |
PubMedSearch : Aylward_2013_Genome.Announc_1_e0023912 |
PubMedID: 23516234 |
Gene_locus related to this paper: serma-l0mn97 , serma-l0mh84 , serma-l0mif0 |
Title : Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T - Pester_2012_J.Bacteriol_194_6300 |
Author(s) : Pester M , Brambilla E , Alazard D , Rattei T , Weinmaier T , Han J , Lucas S , Lapidus A , Cheng JF , Goodwin L , Pitluck S , Peters L , Ovchinnikova G , Teshima H , Detter JC , Han CS , Tapia R , Land ML , Hauser L , Kyrpides NC , Ivanova NN , Pagani I , Huntmann M , Wei CL , Davenport KW , Daligault H , Chain PS , Chen A , Mavromatis K , Markowitz V , Szeto E , Mikhailova N , Pati A , Wagner M , Woyke T , Ollivier B , Klenk HP , Spring S , Loy A |
Ref : Journal of Bacteriology , 194 :6300 , 2012 |
Abstract : |
PubMedSearch : Pester_2012_J.Bacteriol_194_6300 |
PubMedID: 23105050 |
Gene_locus related to this paper: desaj-i4dc82 , desmd-j7j1v2 , desod-g7wg97 , desaj-i4d5q8 |
Title : High-quality draft genome sequence of the Opitutaceae bacterium strain TAV1, a symbiont of the wood-feeding termite Reticulitermes flavipes - Isanapong_2012_J.Bacteriol_194_2744 |
Author(s) : Isanapong J , Goodwin L , Bruce D , Chen A , Detter C , Han J , Han CS , Held B , Huntemann M , Ivanova N , Land ML , Mavromatis K , Nolan M , Pati A , Pennacchio L , Pitluck S , Szeto E , Tapia R , Woyke T , Rodrigues JL |
Ref : Journal of Bacteriology , 194 :2744 , 2012 |
Abstract : |
PubMedSearch : Isanapong_2012_J.Bacteriol_194_2744 |
PubMedID: 22535930 |
Gene_locus related to this paper: 9bact-i6azi1 |
Title : Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park - Mead_2012_Stand.Genomic.Sci_6_381 |
Author(s) : Mead DA , Lucas S , Copeland A , Lapidus A , Cheng JF , Bruce DC , Goodwin LA , Pitluck S , Chertkov O , Zhang X , Detter JC , Han CS , Tapia R , Land M , Hauser LJ , Chang YJ , Kyrpides NC , Ivanova NN , Ovchinnikova G , Woyke T , Brumm C , Hochstein R , Schoenfeld T , Brumm P |
Ref : Stand Genomic Sci , 6 :381 , 2012 |
Abstract : |
PubMedSearch : Mead_2012_Stand.Genomic.Sci_6_381 |
PubMedID: 23408395 |
Gene_locus related to this paper: geos4-d3efm9 |
Title : Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus - Tang_2011_BMC.Genomics_12_334 |
Author(s) : Tang KH , Barry K , Chertkov O , Dalin E , Han CS , Hauser LJ , Honchak BM , Karbach LE , Land ML , Lapidus A , Larimer FW , Mikhailova N , Pitluck S , Pierson BK , Blankenship RE |
Ref : BMC Genomics , 12 :334 , 2011 |
Abstract : |
PubMedSearch : Tang_2011_BMC.Genomics_12_334 |
PubMedID: 21714912 |
Gene_locus related to this paper: chlaa-a9we32 |
Title : Genome sequence of Streptomyces griseus strain XylebKG-1, an ambrosia beetle-associated actinomycete - Grubbs_2011_J.Bacteriol_193_2890 |
Author(s) : Grubbs KJ , Biedermann PH , Suen G , Adams SM , Moeller JA , Klassen JL , Goodwin LA , Woyke T , Munk AC , Bruce D , Detter C , Tapia R , Han CS , Currie CR |
Ref : Journal of Bacteriology , 193 :2890 , 2011 |
Abstract : |
PubMedSearch : Grubbs_2011_J.Bacteriol_193_2890 |
PubMedID: 21460079 |
Gene_locus related to this paper: strgg-b1vz78 , strgg-b1vzw6 , strgg-b1w021 , strgg-b1w1b1 |
Title : Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum - Miller_2011_J.Bacteriol_193_2357 |
Author(s) : Miller DA , Suen G , Bruce D , Copeland A , Cheng JF , Detter C , Goodwin LA , Han CS , Hauser LJ , Land ML , Lapidus A , Lucas S , Meincke L , Pitluck S , Tapia R , Teshima H , Woyke T , Fox BG , Angert ER , Currie CR |
Ref : Journal of Bacteriology , 193 :2357 , 2011 |
Abstract : |
PubMedSearch : Miller_2011_J.Bacteriol_193_2357 |
PubMedID: 21398547 |
Gene_locus related to this paper: celld-f2js06 |
Title : Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20 - Hauser_2011_J.Bacteriol_193_4268 |
Author(s) : Hauser LJ , Land ML , Brown SD , Larimer F , Keller KL , Rapp-Giles BJ , Price MN , Lin M , Bruce DC , Detter JC , Tapia R , Han CS , Goodwin LA , Cheng JF , Pitluck S , Copeland A , Lucas S , Nolan M , Lapidus AL , Palumbo AV , Wall JD |
Ref : Journal of Bacteriology , 193 :4268 , 2011 |
Abstract : |
PubMedSearch : Hauser_2011_J.Bacteriol_193_4268 |
PubMedID: 21685289 |
Gene_locus related to this paper: desag-q310n6 |
Title : Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988 - Pappas_2011_J.Bacteriol_193_5051 |
Author(s) : Pappas KM , Kouvelis VN , Saunders E , Brettin TS , Bruce D , Detter C , Balakireva M , Han CS , Savvakis G , Kyrpides NC , Typas MA |
Ref : Journal of Bacteriology , 193 :5051 , 2011 |
Abstract : |
PubMedSearch : Pappas_2011_J.Bacteriol_193_5051 |
PubMedID: 21725006 |
Gene_locus related to this paper: zymmo-q5nmh0 , zymma-a0a0h3g4v2 |
Title : Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132 - Brown_2011_J.Bacteriol_193_2078 |
Author(s) : Brown SD , Gilmour CC , Kucken AM , Wall JD , Elias DA , Brandt CC , Podar M , Chertkov O , Held B , Bruce DC , Detter JC , Tapia R , Han CS , Goodwin LA , Cheng JF , Pitluck S , Woyke T , Mikhailova N , Ivanova NN , Han J , Lucas S , Lapidus AL , Land ML , Hauser LJ , Palumbo AV |
Ref : Journal of Bacteriology , 193 :2078 , 2011 |
Abstract : |
PubMedSearch : Brown_2011_J.Bacteriol_193_2078 |
PubMedID: 21357488 |
Gene_locus related to this paper: desde-f0jku0 |
Title : Draft genome sequence of the thermoalkaliphilic Caldalkalibacillus thermarum strain TA2.A1 - Kalamorz_2011_J.Bacteriol_193_4290 |
Author(s) : Kalamorz F , Keis S , McMillan DG , Olsson K , Stanton JA , Stockwell P , Black MA , Klingeman DM , Land ML , Han CS , Martin SL , Becher SA , Peddie CJ , Morgan HW , Matthies D , Preiss L , Meier T , Brown SD , Cook GM |
Ref : Journal of Bacteriology , 193 :4290 , 2011 |
Abstract : |
PubMedSearch : Kalamorz_2011_J.Bacteriol_193_4290 |
PubMedID: 21685297 |
Gene_locus related to this paper: 9baci-f5l4c2 , 9baci-f5l4h2 , 9baci-f5l4h3 |
Title : Genome sequence of the ethanol-producing Zymomonas mobilis subsp. pomaceae lectotype strain ATCC 29192 - Kouvelis_2011_J.Bacteriol_193_5049 |
Author(s) : Kouvelis VN , Davenport KW , Brettin TS , Bruce D , Detter C , Han CS , Nolan M , Tapia R , Damoulaki A , Kyrpides NC , Typas MA , Pappas KM |
Ref : Journal of Bacteriology , 193 :5049 , 2011 |
Abstract : |
PubMedSearch : Kouvelis_2011_J.Bacteriol_193_5049 |
PubMedID: 21742897 |
Gene_locus related to this paper: zymmt-f8eue4 |
Title : Genome sequence of the mercury-methylating and pleomorphic Desulfovibrio africanus Strain Walvis Bay - Brown_2011_J.Bacteriol_193_4037 |
Author(s) : Brown SD , Wall JD , Kucken AM , Gilmour CC , Podar M , Brandt CC , Teshima H , Detter JC , Han CS , Land ML , Lucas S , Han J , Pennacchio L , Nolan M , Pitluck S , Woyke T , Goodwin L , Palumbo AV , Elias DA |
Ref : Journal of Bacteriology , 193 :4037 , 2011 |
Abstract : |
PubMedSearch : Brown_2011_J.Bacteriol_193_4037 |
PubMedID: 21642452 |
Gene_locus related to this paper: desaf-f3ywu6 |
Title : Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7 - Suen_2011_J.Bacteriol_193_5574 |
Author(s) : Suen G , Stevenson DM , Bruce DC , Chertkov O , Copeland A , Cheng JF , Detter C , Detter JC , Goodwin LA , Han CS , Hauser LJ , Ivanova NN , Kyrpides NC , Land ML , Lapidus A , Lucas S , Ovchinnikova G , Pitluck S , Tapia R , Woyke T , Boyum J , Mead D , Weimer PJ |
Ref : Journal of Bacteriology , 193 :5574 , 2011 |
Abstract : |
PubMedSearch : Suen_2011_J.Bacteriol_193_5574 |
PubMedID: 21914885 |
Gene_locus related to this paper: ruma7-e6ujm0 , ruma7-e6ukm6 , rumal-a0a011v2q8 , ruma7-e6ukb2 |
Title : Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T - Elkins_2010_J.Bacteriol_192_6099 |
Author(s) : Elkins JG , Lochner A , Hamilton-Brehm SD , Davenport KW , Podar M , Brown SD , Land ML , Hauser LJ , Klingeman DM , Raman B , Goodwin LA , Tapia R , Meincke LJ , Detter JC , Bruce DC , Han CS , Palumbo AV , Cottingham RW , Keller M , Graham DE |
Ref : Journal of Bacteriology , 192 :6099 , 2010 |
Abstract : |
PubMedSearch : Elkins_2010_J.Bacteriol_192_6099 |
PubMedID: 20851897 |
Gene_locus related to this paper: caloo-d9tg02 |
Title : Comparative genomics of clinical and environmental Vibrio mimicus - Hasan_2010_Proc.Natl.Acad.Sci.U.S.A_107_21134 |
Author(s) : Hasan NA , Grim CJ , Haley BJ , Chun J , Alam M , Taviani E , Hoq M , Munk AC , Saunders E , Brettin TS , Bruce DC , Challacombe JF , Detter JC , Han CS , Xie G , Nair GB , Huq A , Colwell RR |
Ref : Proc Natl Acad Sci U S A , 107 :21134 , 2010 |
Abstract : |
PubMedSearch : Hasan_2010_Proc.Natl.Acad.Sci.U.S.A_107_21134 |
PubMedID: 21078967 |
Gene_locus related to this paper: vibch-VC2610 , vibch-VC2718 , vibch-VCA0688 , vibch-y1892 , vibch-y2276 , vibmi-d0gt41 , vibmi-u4zh77 |
Title : The genomic basis of trophic strategy in marine bacteria - Lauro_2009_Proc.Natl.Acad.Sci.U.S.A_106_15527 |
Author(s) : Lauro FM , McDougald D , Thomas T , Williams TJ , Egan S , Rice S , DeMaere MZ , Ting L , Ertan H , Johnson J , Ferriera S , Lapidus A , Anderson I , Kyrpides N , Munk AC , Detter C , Han CS , Brown MV , Robb FT , Kjelleberg S , Cavicchioli R |
Ref : Proc Natl Acad Sci U S A , 106 :15527 , 2009 |
Abstract : |
PubMedSearch : Lauro_2009_Proc.Natl.Acad.Sci.U.S.A_106_15527 |
PubMedID: 19805210 |
Gene_locus related to this paper: phoas-q1zm99 , phoas-q1zpt1 , phoas-q1zwh7 , phoas-q1zx01 , phoas-q1zlj9 , sphal-q1grs6 |
Title : Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae - Chun_2009_Proc.Natl.Acad.Sci.U.S.A_106_15442 |
Author(s) : Chun J , Grim CJ , Hasan NA , Lee JH , Choi SY , Haley BJ , Taviani E , Jeon YS , Kim DW , Brettin TS , Bruce DC , Challacombe JF , Detter JC , Han CS , Munk AC , Chertkov O , Meincke L , Saunders E , Walters RA , Huq A , Nair GB , Colwell RR |
Ref : Proc Natl Acad Sci U S A , 106 :15442 , 2009 |
Abstract : |
PubMedSearch : Chun_2009_Proc.Natl.Acad.Sci.U.S.A_106_15442 |
PubMedID: 19720995 |
Gene_locus related to this paper: vibch-lipas , vibch-VC0135 , vibch-VC1418 , vibch-VC1974 , vibch-VC2432 , vibch-VC2718 , vibch-VCA0063 , vibch-VCA0490 , vibch-VCA0688 , vibch-VCA0754 , vibch-y1892 , vibch-y2276 |
Title : The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnology - Mattes_2008_Appl.Environ.Microbiol_74_6405 |
Author(s) : Mattes TE , Alexander AK , Richardson PM , Munk AC , Han CS , Stothard P , Coleman NV |
Ref : Applied Environmental Microbiology , 74 :6405 , 2008 |
Abstract : |
PubMedSearch : Mattes_2008_Appl.Environ.Microbiol_74_6405 |
PubMedID: 18723656 |
Gene_locus related to this paper: polsj-hboh |
Title : Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii - Xie_2007_Appl.Environ.Microbiol_73_3536 |
Author(s) : Xie G , Bruce DC , Challacombe JF , Chertkov O , Detter JC , Gilna P , Han CS , Lucas S , Misra M , Myers GL , Richardson P , Tapia R , Thayer N , Thompson LS , Brettin TS , Henrissat B , Wilson DB , McBride MJ |
Ref : Applied Environmental Microbiology , 73 :3536 , 2007 |
Abstract : |
PubMedSearch : Xie_2007_Appl.Environ.Microbiol_73_3536 |
PubMedID: 17400776 |
Gene_locus related to this paper: cyth3-q11pu3 , cyth3-q11rb1 , cyth3-q11sp5 , cyth3-q11sp6 , cyth3-q11ty5 , cyth3-q11vh6 , cyth3-q11vj5 , cyth3-q11w17 , cyth3-q11xy0 |
Title : Complete genome sequence of Haemophilus somnus (Histophilus somni) strain 129Pt and comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd - Challacombe_2007_J.Bacteriol_189_1890 |
Author(s) : Challacombe JF , Duncan AJ , Brettin TS , Bruce D , Chertkov O , Detter JC , Han CS , Misra M , Richardson P , Tapia R , Thayer N , Xie G , Inzana TJ |
Ref : Journal of Bacteriology , 189 :1890 , 2007 |
Abstract : |
PubMedSearch : Challacombe_2007_J.Bacteriol_189_1890 |
PubMedID: 17172329 |
Gene_locus related to this paper: haes1-q0i317 , haes1-q0i470 , haes2-b0utw7 , haes2-b0uvn0 , haes2-b0uwc2 |
Title : The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes - Maeder_2006_J.Bacteriol_188_7922 |
Author(s) : Maeder DL , Anderson I , Brettin TS , Bruce DC , Gilna P , Han CS , Lapidus A , Metcalf WW , Saunders E , Tapia R , Sowers KR |
Ref : Journal of Bacteriology , 188 :7922 , 2006 |
Abstract : |
PubMedSearch : Maeder_2006_J.Bacteriol_188_7922 |
PubMedID: 16980466 |
Gene_locus related to this paper: metbf-q46ca9 , metbf-q469u5 |