| Title : Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift - Liolos_2013_Stand.Genomic.Sci_8_165 |
| Author(s) : Liolos K , Abt B , Scheuner C , Teshima H , Held B , Lapidus A , Nolan M , Lucas S , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Huntemann M , Pati A , Chen A , Palaniappan K , Land M , Rohde M , Tindall BJ , Detter JC , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Woyke T , Klenk HP , Kyrpides NC |
| Ref : Stand Genomic Sci , 8 :165 , 2013 |
| Abstract : |
| PubMedSearch : Liolos_2013_Stand.Genomic.Sci_8_165 |
| PubMedID: 23991249 |
| Gene_locus related to this paper: spiaz-h9uj53 |
| Title : Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements - Riedel_2013_Stand.Genomic.Sci_8_389 |
| Author(s) : Riedel T , Teshima H , Petersen J , Fiebig A , Davenport K , Daligault H , Erkkila T , Gu W , Munk C , Xu Y , Chen A , Pati A , Ivanova N , Goodwin LA , Chain P , Detter JC , Rohde M , Gronow S , Kyrpides NC , Woyke T , Goker M , Brinkhoff T , Klenk HP |
| Ref : Stand Genomic Sci , 8 :389 , 2013 |
| Abstract : |
| PubMedSearch : Riedel_2013_Stand.Genomic.Sci_8_389 |
| PubMedID: 24501625 |
| Title : Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema - Abt_2013_Stand.Genomic.Sci_8_88 |
| Author(s) : Abt B , Goker M , Scheuner C , Han C , Lu M , Misra M , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Huntemann M , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Jeffries CD , Rohde M , Spring S , Gronow S , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Woyke T , Klenk HP |
| Ref : Stand Genomic Sci , 8 :88 , 2013 |
| Abstract : |
| PubMedSearch : Abt_2013_Stand.Genomic.Sci_8_88 |
| PubMedID: 23961314 |
| Gene_locus related to this paper: trech-f8f1l1 |
| Title : Genome sequences for three denitrifying bacterial strains isolated from a uranium- and nitrate-contaminated subsurface environment - Venkatramanan_2013_Genome.Announc_1_e00449 |
| Author(s) : Venkatramanan R , Prakash O , Woyke T , Chain P , Goodwin LA , Watson D , Brooks S , Kostka JE , Green SJ |
| Ref : Genome Announc , 1 : , 2013 |
| Abstract : |
| PubMedSearch : Venkatramanan_2013_Genome.Announc_1_e00449 |
| PubMedID: 23833140 |
| Gene_locus related to this paper: 9baci-n0b036 , 9rhiz-n0b8e3 , 9baci-n0b4v4 , 9rhiz-n0bcs3 |
| Title : Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug) - Stackebrandt_2013_Stand.Genomic.Sci_8_15 |
| Author(s) : Stackebrandt E , Zeytun A , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Huntemann M , Pati A , Chen A , Palaniappan K , Chang YJ , Land M , Hauser L , Rohde M , Pukall R , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP |
| Ref : Stand Genomic Sci , 8 :15 , 2013 |
| Abstract : |
| PubMedSearch : Stackebrandt_2013_Stand.Genomic.Sci_8_15 |
| PubMedID: 23961308 |
| Gene_locus related to this paper: corgp-f2n8w7 |
| Title : Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)) - Riedel_2012_Stand.Genomic.Sci_7_107 |
| Author(s) : Riedel T , Held B , Nolan M , Lucas S , Lapidus A , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Goodwin LA , Pitluck S , Liolios K , Mavromatis K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Rohde M , Tindall BJ , Detter JC , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T |
| Ref : Stand Genomic Sci , 7 :107 , 2012 |
| Abstract : |
| PubMedSearch : Riedel_2012_Stand.Genomic.Sci_7_107 |
| PubMedID: 23450183 |
| Gene_locus related to this paper: 9flao-h2bu38 |
| Title : Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney - Copeland_2012_Stand.Genomic.Sci_6_21 |
| Author(s) : Copeland A , Gu W , Yasawong M , Lapidus A , Lucas S , Deshpande S , Pagani I , Tapia R , Cheng JF , Goodwin LA , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Pan C , Brambilla EM , Rohde M , Tindall BJ , Sikorski J , Goker M , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T |
| Ref : Stand Genomic Sci , 6 :21 , 2012 |
| Abstract : |
| PubMedSearch : Copeland_2012_Stand.Genomic.Sci_6_21 |
| PubMedID: 22675595 |
| Gene_locus related to this paper: marht-f2nq80 |
| Title : Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)) - Klenk_2012_Stand.Genomic.Sci_6_265 |
| Author(s) : Klenk HP , Lu M , Lucas S , Lapidus A , Copeland A , Pitluck S , Goodwin LA , Han C , Tapia R , Brambilla EM , Potter G , Land M , Ivanova N , Rohde M , Goker M , Detter JC , Li WJ , Kyrpides NC , Woyke T |
| Ref : Stand Genomic Sci , 6 :265 , 2012 |
| Abstract : |
| PubMedSearch : Klenk_2012_Stand.Genomic.Sci_6_265 |
| PubMedID: 22768369 |
| Gene_locus related to this paper: 9pseu-h5x8w4 , 9pseu-h5x5e2 , 9pseu-h5xbd6 , 9pseu-h5x783 |
| Title : Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128(T)) - Klenk_2012_Stand.Genomic.Sci_6_220 |
| Author(s) : Klenk HP , Held B , Lucas S , Lapidus A , Copeland A , Hammon N , Pitluck S , Goodwin LA , Han C , Tapia R , Brambilla EM , Potter G , Land M , Ivanova N , Rohde M , Goker M , Detter JC , Kyrpides NC , Woyke T |
| Ref : Stand Genomic Sci , 6 :220 , 2012 |
| Abstract : |
| PubMedSearch : Klenk_2012_Stand.Genomic.Sci_6_220 |
| PubMedID: 22768365 |
| Gene_locus related to this paper: 9pseu-h8gca1 , 9pseu-h0k1d7 , 9pseu-h0k6z7 |
| Title : Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) - Mavromatis_2012_Stand.Genomic.Sci_6_210 |
| Author(s) : Mavromatis K , Chertkov O , Lapidus A , Nolan M , Lucas S , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Bruce D , Goodwin LA , Pitluck S , Huntemann M , Liolios K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Brambilla EM , Rohde M , Spring S , Goker M , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T |
| Ref : Stand Genomic Sci , 6 :210 , 2012 |
| Abstract : |
| PubMedSearch : Mavromatis_2012_Stand.Genomic.Sci_6_210 |
| PubMedID: 22768364 |
| Gene_locus related to this paper: sapgl-h6kz52 , 9bact-j0p3n9 |
| Title : Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)) - Riedel_2012_Stand.Genomic.Sci_7_120 |
| Author(s) : Riedel T , Held B , Nolan M , Lucas S , Lapidus A , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Goodwin LA , Pitluck S , Liolios K , Mavromatis K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Rohde M , Tindall BJ , Detter JC , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC |
| Ref : Stand Genomic Sci , 7 :120 , 2012 |
| Abstract : |
| PubMedSearch : Riedel_2012_Stand.Genomic.Sci_7_120 |
| PubMedID: 23450211 |
| Gene_locus related to this paper: owehd-g8r0w8 |
| Title : Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)) - Han_2012_Stand.Genomic.Sci_6_94 |
| Author(s) : Han C , Kotsyurbenko O , Chertkov O , Held B , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla EM , Rohde M , Spring S , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Detter JC |
| Ref : Stand Genomic Sci , 6 :94 , 2012 |
| Abstract : |
| PubMedSearch : Han_2012_Stand.Genomic.Sci_6_94 |
| PubMedID: 22675602 |
| Gene_locus related to this paper: sulky-e4u307 |
| Title : Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park - Mead_2012_Stand.Genomic.Sci_6_381 |
| Author(s) : Mead DA , Lucas S , Copeland A , Lapidus A , Cheng JF , Bruce DC , Goodwin LA , Pitluck S , Chertkov O , Zhang X , Detter JC , Han CS , Tapia R , Land M , Hauser LJ , Chang YJ , Kyrpides NC , Ivanova NN , Ovchinnikova G , Woyke T , Brumm C , Hochstein R , Schoenfeld T , Brumm P |
| Ref : Stand Genomic Sci , 6 :381 , 2012 |
| Abstract : |
| PubMedSearch : Mead_2012_Stand.Genomic.Sci_6_381 |
| PubMedID: 23408395 |
| Gene_locus related to this paper: geos4-d3efm9 |
| Title : Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)) - Kappler_2012_Stand.Genomic.Sci_7_44 |
| Author(s) : Kappler U , Davenport K , Beatson S , Lucas S , Lapidus A , Copeland A , Berry KW , Glavina Del Rio T , Hammon N , Dalin E , Tice H , Pitluck S , Richardson P , Bruce D , Goodwin LA , Han C , Tapia R , Detter JC , Chang YJ , Jeffries CD , Land M , Hauser L , Kyrpides NC , Goker M , Ivanova N , Klenk HP , Woyke T |
| Ref : Stand Genomic Sci , 7 :44 , 2012 |
| Abstract : |
| PubMedSearch : Kappler_2012_Stand.Genomic.Sci_7_44 |
| PubMedID: 23450099 |
| Gene_locus related to this paper: stand-d7a8r1 |
| Title : Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)) - Anderson_2012_Stand.Genomic.Sci_6_174 |
| Author(s) : Anderson I , Held B , Lapidus A , Nolan M , Lucas S , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Goodwin LA , Pitluck S , Liolios K , Mavromatis K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Brambilla EM , Rohde M , Spring S , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC |
| Ref : Stand Genomic Sci , 6 :174 , 2012 |
| Abstract : |
| PubMedSearch : Anderson_2012_Stand.Genomic.Sci_6_174 |
| PubMedID: 22768361 |
| Gene_locus related to this paper: 9bact-h1nzy5 |
| Title : Genome sequence of Streptomyces griseus strain XylebKG-1, an ambrosia beetle-associated actinomycete - Grubbs_2011_J.Bacteriol_193_2890 |
| Author(s) : Grubbs KJ , Biedermann PH , Suen G , Adams SM , Moeller JA , Klassen JL , Goodwin LA , Woyke T , Munk AC , Bruce D , Detter C , Tapia R , Han CS , Currie CR |
| Ref : Journal of Bacteriology , 193 :2890 , 2011 |
| Abstract : |
| PubMedSearch : Grubbs_2011_J.Bacteriol_193_2890 |
| PubMedID: 21460079 |
| Gene_locus related to this paper: strgg-b1vz78 , strgg-b1vzw6 , strgg-b1w021 , strgg-b1w1b1 |
| Title : Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7 - Suen_2011_J.Bacteriol_193_5574 |
| Author(s) : Suen G , Stevenson DM , Bruce DC , Chertkov O , Copeland A , Cheng JF , Detter C , Detter JC , Goodwin LA , Han CS , Hauser LJ , Ivanova NN , Kyrpides NC , Land ML , Lapidus A , Lucas S , Ovchinnikova G , Pitluck S , Tapia R , Woyke T , Boyum J , Mead D , Weimer PJ |
| Ref : Journal of Bacteriology , 193 :5574 , 2011 |
| Abstract : |
| PubMedSearch : Suen_2011_J.Bacteriol_193_5574 |
| PubMedID: 21914885 |
| Gene_locus related to this paper: ruma7-e6ujm0 , ruma7-e6ukm6 , rumal-a0a011v2q8 , ruma7-e6ukb2 |
| Title : Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132 - Brown_2011_J.Bacteriol_193_2078 |
| Author(s) : Brown SD , Gilmour CC , Kucken AM , Wall JD , Elias DA , Brandt CC , Podar M , Chertkov O , Held B , Bruce DC , Detter JC , Tapia R , Han CS , Goodwin LA , Cheng JF , Pitluck S , Woyke T , Mikhailova N , Ivanova NN , Han J , Lucas S , Lapidus AL , Land ML , Hauser LJ , Palumbo AV |
| Ref : Journal of Bacteriology , 193 :2078 , 2011 |
| Abstract : |
| PubMedSearch : Brown_2011_J.Bacteriol_193_2078 |
| PubMedID: 21357488 |
| Gene_locus related to this paper: desde-f0jku0 |
| Title : Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum - Miller_2011_J.Bacteriol_193_2357 |
| Author(s) : Miller DA , Suen G , Bruce D , Copeland A , Cheng JF , Detter C , Goodwin LA , Han CS , Hauser LJ , Land ML , Lapidus A , Lucas S , Meincke L , Pitluck S , Tapia R , Teshima H , Woyke T , Fox BG , Angert ER , Currie CR |
| Ref : Journal of Bacteriology , 193 :2357 , 2011 |
| Abstract : |
| PubMedSearch : Miller_2011_J.Bacteriol_193_2357 |
| PubMedID: 21398547 |
| Gene_locus related to this paper: celld-f2js06 |
| Title : Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20 - Hauser_2011_J.Bacteriol_193_4268 |
| Author(s) : Hauser LJ , Land ML , Brown SD , Larimer F , Keller KL , Rapp-Giles BJ , Price MN , Lin M , Bruce DC , Detter JC , Tapia R , Han CS , Goodwin LA , Cheng JF , Pitluck S , Copeland A , Lucas S , Nolan M , Lapidus AL , Palumbo AV , Wall JD |
| Ref : Journal of Bacteriology , 193 :4268 , 2011 |
| Abstract : |
| PubMedSearch : Hauser_2011_J.Bacteriol_193_4268 |
| PubMedID: 21685289 |
| Gene_locus related to this paper: desag-q310n6 |
| Title : Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus - Blumer-Schuette_2011_J.Bacteriol_193_1483 |
| Author(s) : Blumer-Schuette SE , Ozdemir I , Mistry D , Lucas S , Lapidus A , Cheng JF , Goodwin LA , Pitluck S , Land ML , Hauser LJ , Woyke T , Mikhailova N , Pati A , Kyrpides NC , Ivanova N , Detter JC , Walston-Davenport K , Han S , Adams MW , Kelly RM |
| Ref : Journal of Bacteriology , 193 :1483 , 2011 |
| Abstract : |
| PubMedSearch : Blumer-Schuette_2011_J.Bacteriol_193_1483 |
| PubMedID: 21216991 |
| Gene_locus related to this paper: calki-e4s634 , calh1-e4q772 |
| Title : Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190 - Sales_2011_J.Bacteriol_193_4549 |
| Author(s) : Sales CM , Mahendra S , Grostern A , Parales RE , Goodwin LA , Woyke T , Nolan M , Lapidus A , Chertkov O , Ovchinnikova G , Sczyrba A , Alvarez-Cohen L |
| Ref : Journal of Bacteriology , 193 :4549 , 2011 |
| Abstract : |
| PubMedSearch : Sales_2011_J.Bacteriol_193_4549 |
| PubMedID: 21725009 |
| Gene_locus related to this paper: 9pseu-f4ck55 , 9pseu-f4cxt1 , pseux-f4cs60 , pseux-f4cva7 , pseux-f4czc7 , pseux-f4czf1 , pseux-f4czh4 , pseux-f4crs9 , pseux-f4cs44 , pseux-f4cw88 , pseux-f4cxn4 |
| Title : Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae - Klippel_2011_J.Bacteriol_193_4545 |
| Author(s) : Klippel B , Lochner A , Bruce DC , Davenport KW , Detter C , Goodwin LA , Han J , Han S , Hauser L , Land ML , Nolan M , Ovchinnikova G , Pennacchio L , Pitluck S , Tapia R , Woyke T , Wiebusch S , Basner A , Abe F , Horikoshi K , Keller M , Antranikian G |
| Ref : Journal of Bacteriology , 193 :4545 , 2011 |
| Abstract : |
| PubMedSearch : Klippel_2011_J.Bacteriol_193_4545 |
| PubMedID: 21725025 |
| Gene_locus related to this paper: lacs5-f6gdi8 , doks4-f4b2f7 |
| Title : Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614 - Coleman_2011_J.Bacteriol_193_3399 |
| Author(s) : Coleman NV , Wilson NL , Barry K , Brettin TS , Bruce DC , Copeland A , Dalin E , Detter JC , Del Rio TG , Goodwin LA , Hammon NM , Han S , Hauser LJ , Israni S , Kim E , Kyrpides N , Land ML , Lapidus A , Larimer FW , Lucas S , Pitluck S , Richardson P , Schmutz J , Tapia R , Thompson S , Tice HN , Spain JC , Gossett JG , Mattes TE |
| Ref : Journal of Bacteriology , 193 :3399 , 2011 |
| Abstract : |
| PubMedSearch : Coleman_2011_J.Bacteriol_193_3399 |
| PubMedID: 21551312 |
| Gene_locus related to this paper: nocsj-a1sil5 |
| Title : Complete genome sequence of the marine cellulose- and xylan-degrading bacterium Glaciecola sp. strain 4H-3-7+YE-5 - Klippel_2011_J.Bacteriol_193_4547 |
| Author(s) : Klippel B , Lochner A , Bruce DC , Davenport KW , Detter C , Goodwin LA , Han J , Han S , Land ML , Mikhailova N , Nolan M , Pennacchio L , Pitluck S , Tapia R , Woyke T , Wiebusch S , Basner A , Abe F , Horikoshi K , Keller M , Antranikian G |
| Ref : Journal of Bacteriology , 193 :4547 , 2011 |
| Abstract : |
| PubMedSearch : Klippel_2011_J.Bacteriol_193_4547 |
| PubMedID: 21705587 |
| Gene_locus related to this paper: glas4-f4ahz5 , glas4-f4aq74 , glas4-f4ajt2 |
| Title : Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T - Elkins_2010_J.Bacteriol_192_6099 |
| Author(s) : Elkins JG , Lochner A , Hamilton-Brehm SD , Davenport KW , Podar M , Brown SD , Land ML , Hauser LJ , Klingeman DM , Raman B , Goodwin LA , Tapia R , Meincke LJ , Detter JC , Bruce DC , Han CS , Palumbo AV , Cottingham RW , Keller M , Graham DE |
| Ref : Journal of Bacteriology , 192 :6099 , 2010 |
| Abstract : |
| PubMedSearch : Elkins_2010_J.Bacteriol_192_6099 |
| PubMedID: 20851897 |
| Gene_locus related to this paper: caloo-d9tg02 |