mouse-pafa

 
Mus musculus plasma PAF acetylhydrolase

Comment
RIKEN full-length clone:1500005E13


Relationship
Block X
Mus musculus position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Sarcopterygii: N E > Dipnotetrapodomorpha: N E > Tetrapoda: N E > Amniota: N E > Mammalia: N E > Theria: N E > Eutheria: N E > Boreoeutheria: N E > Euarchontoglires: N E > Glires: N E > Rodentia: N E > Myomorpha: N E > Muroidea: N E > Muridae: N E > Murinae: N E > Mus [genus]: N E > Mus [subgenus]: N E > Mus musculus: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



3 Genbank : U34277, AK005158, AK155678
2 UniProt : Q60963, Q3U1V7
2 Ncbi-nid : 1041235, 12836890
3 Ncbi-pid : 2497688, 1041236, 12836891
3 UniProtTrembl : Q60963, Q9DB74, Q3U1V7
3 Interpro : Q60963, Q9DB74, Q3U1V7
3 Prodom : Q60963, Q9DB74, Q3U1V7
3 Pfam : Q60963, Q9DB74, Q3U1V7
3 PIRSF : Q60963, Q9DB74, Q3U1V7
3 SUPERFAM : Q60963, Q9DB74, Q3U1V7
3 QuickSwissBlast : Q60963, Q9DB74, Q3U1V7
1 MGD : 1351327
2 ENSEMBL : Q60963, ENSMUSG00000023913
 
Sequence
Graphical view for this peptide sequence: mouse-pafa
Colored MSA for PAF-Acetylhydrolase (raw)
MVPLKLQALFCLLCCLPWVHPFHWQDTSSFDFRPSVMFHKLQSVMSAAGS
GHSKIPKGNGSYPVGCTDLMFGYGNESVFVRLYYPAQDQGRLDTVWIPNK
EYFLGLSIFLGTPSIVGNILHLLYGSLTTPASWNSPLRTGEKYPLIVFSH
GLGAFRTIYSAIGIGLASNGFIVATVEHRDRSASATYFFEDQVAAKVENR
SWLYLRKVKQEESESVRKEQVQQRAIECSRALSAILDIEHGDPKENVLGS
AFDMKQLKDAIDETKIALMGHSFGGATVLQALSEDQRFRCGVALDPWMYP
VNEELYSRTLQPLLFINSAKFQTPKDIAKMKKFYQPDKERKNDYNQGLRH
QNFDDFTFVTGKIIGNKLTLKGEIDSRVAIDLTNKASMAFLQKHLGLQKD
FDQWDPLVEGDDENLIPGSPFDAVTQAPAQQHSPGSQTQN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MVPLKLQALFCLLCCLPWVHPFHWQDTSSFDFRPSVMFHKLQSVMSAAGS
GHSKIPKGNGSYPVGCTDLMFGYGNESVFVRLYYPAQDQGRLDTVWIPNK
EYFLGLSIFLGTPSIVGNILHLLYGSLTTPASWNSPLRTGEKYPLIVFSH
GLGAFRTIYSAIGIGLASNGFIVATVEHRDRSASATYFFEDQVAAKVENR
SWLYLRKVKQEESESVRKEQVQQRAIECSRALSAILDIEHGDPKENVLGS
AFDMKQLKDAIDETKIALMGHSFGGATVLQALSEDQRFRCGVALDPWMYP
VNEELYSRTLQPLLFINSAKFQTPKDIAKMKKFYQPDKERKNDYNQGLRH
QNFDDFTFVTGKIIGNKLTLKGEIDSRVAIDLTNKASMAFLQKHLGLQKD
FDQWDPLVEGDDENLIPGSPFDAVTQAPAQQHSPGSQTQN

Graphical view for this nucleotide DNA sequence (1550 bp): mouse-pafa



References
2 more
    Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
    Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R and Hayashizaki Y <127 more author(s)>
    Ref: Nature, 420:563, 2002 : PubMed

            

    Title: Functional annotation of a full-length mouse cDNA collection
    Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y and Hayashizaki Y <86 more author(s)>
    Ref: Nature, 409:685, 2001 : PubMed

            

    Title: Plasma platelet-activating factor acetylhydrolase is a secreted phospholipase A2 with a catalytic triad
    Tjoelker LW, Eberhardt C, Unger J, Le Trong H, Zimmerman GA
    Ref: Journal of Biological Chemistry, 270:25481, 1995 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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