Title : Genomic analysis reveals the molecular basis for capsule loss in the group B Streptococcus population - Rosini_2015_PLoS.One_10_e0125985 |
Author(s) : Rosini R , Campisi E , De Chiara M , Tettelin H , Rinaudo D , Toniolo C , Metruccio M , Guidotti S , Sorensen UB , Kilian M , Ramirez M , Janulczyk R , Donati C , Grandi G , Margarit I |
Ref : PLoS ONE , 10 :e0125985 , 2015 |
Abstract : |
PubMedSearch : Rosini_2015_PLoS.One_10_e0125985 |
PubMedID: 25946017 |
Gene_locus related to this paper: strag-a0a076z217 , strag-a0a0h1ywg1 |
Title : High-level relatedness among Mycobacterium abscessus subsp. massiliense strains from widely separated outbreaks - Tettelin_2014_Emerg.Infect.Dis_20_364 |
Author(s) : Tettelin H , Davidson RM , Agrawal S , Aitken ML , Shallom S , Hasan NA , Strong M , de Moura VC , De Groote MA , Duarte RS , Hine E , Parankush S , Su Q , Daugherty SC , Fraser CM , Brown-Elliott BA , Wallace RJ, Jr. , Holland SM , Sampaio EP , Olivier KN , Jackson M , Zelazny AM |
Ref : Emerg Infect Dis , 20 :364 , 2014 |
Abstract : |
PubMedSearch : Tettelin_2014_Emerg.Infect.Dis_20_364 |
PubMedID: 24565502 |
Gene_locus related to this paper: mycab-b1mch4 , mycab-b1mdu3 , mycab-b1mes2 , mycab-b1mes3 , mycab-b1mfj3 , mycab-b1mgd3 , mycab-b1mkl9 , mycab-r4v1a9 |
Title : Whole genome sequencing to investigate the emergence of clonal complex 23 Neisseria meningitidis serogroup Y disease in the United States - Krauland_2012_PLoS.One_7_e35699 |
Author(s) : Krauland MG , Dunning Hotopp JC , Riley DR , Daugherty SC , Marsh JW , Messonnier NE , Mayer LW , Tettelin H , Harrison LH |
Ref : PLoS ONE , 7 :e35699 , 2012 |
Abstract : |
PubMedSearch : Krauland_2012_PLoS.One_7_e35699 |
PubMedID: 22558202 |
Title : Genomic insights into the emerging human pathogen Mycobacterium massiliense - Tettelin_2012_J.Bacteriol_194_5450 |
Author(s) : Tettelin H , Sampaio EP , Daugherty SC , Hine E , Riley DR , Sadzewicz L , Sengamalay N , Shefchek K , Su Q , Tallon LJ , Conville P , Olivier KN , Holland SM , Fraser CM , Zelazny AM |
Ref : Journal of Bacteriology , 194 :5450 , 2012 |
Abstract : |
PubMedSearch : Tettelin_2012_J.Bacteriol_194_5450 |
PubMedID: 22965080 |
Gene_locus related to this paper: mycab-b1mdu3 , mycab-b1mes2 , mycab-b1mes3 , mycab-b1mfj3 , mycab-i9cu79 , mycab-i0pm15 , mycab-i0p5k2 , mycab-h0ig31 , mycab-h0iii8 , myca9-b1miq0 , mycab-r4v1a9 |
Title : Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination - Budroni_2011_Proc.Natl.Acad.Sci.U.S.A_108_4494 |
Author(s) : Budroni S , Siena E , Dunning Hotopp JC , Seib KL , Serruto D , Nofroni C , Comanducci M , Riley DR , Daugherty SC , Angiuoli SV , Covacci A , Pizza M , Rappuoli R , Moxon ER , Tettelin H , Medini D |
Ref : Proc Natl Acad Sci U S A , 108 :4494 , 2011 |
Abstract : |
PubMedSearch : Budroni_2011_Proc.Natl.Acad.Sci.U.S.A_108_4494 |
PubMedID: 21368196 |
Gene_locus related to this paper: neigo-pip , neima-metx , neime-ESD , neime-NMA2216 , neime-NMB0276 , neime-NMB1877 |
Title : Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species - Donati_2010_Genome.Biol_11_R107 |
Author(s) : Donati C , Hiller NL , Tettelin H , Muzzi A , Croucher NJ , Angiuoli SV , Oggioni M , Dunning Hotopp JC , Hu FZ , Riley DR , Covacci A , Mitchell TJ , Bentley SD , Kilian M , Ehrlich GD , Rappuoli R , Moxon ER , Masignani V |
Ref : Genome Biol , 11 :R107 , 2010 |
Abstract : |
PubMedSearch : Donati_2010_Genome.Biol_11_R107 |
PubMedID: 21034474 |
Title : Pyrosequencing-based comparative genome analysis of the nosocomial pathogen Enterococcus faecium and identification of a large transferable pathogenicity island - van Schaik_2010_BMC.Genomics_11_239 |
Author(s) : van Schaik W , Top J , Riley DR , Boekhorst J , Vrijenhoek JE , Schapendonk CM , Hendrickx AP , Nijman IJ , Bonten MJ , Tettelin H , Willems RJ |
Ref : BMC Genomics , 11 :239 , 2010 |
Abstract : |
PubMedSearch : van Schaik_2010_BMC.Genomics_11_239 |
PubMedID: 20398277 |
Gene_locus related to this paper: entfc-c2hcr4 , entfc-q3xwb2 , entfc-q3xwy1 , entfc-q3xzi8 , entfc-q3y367 |
Title : Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications - Valdes_2008_BMC.Genomics_9_597 |
Author(s) : Valdes J , Pedroso I , Quatrini R , Dodson RJ , Tettelin H , Blake R, 2nd , Eisen JA , Holmes DS |
Ref : BMC Genomics , 9 :597 , 2008 |
Abstract : |
PubMedSearch : Valdes_2008_BMC.Genomics_9_597 |
PubMedID: 19077236 |
Gene_locus related to this paper: acif2-b7j3y8 , acif2-b7j4u5 , acif2-b7j5z4 , acif2-b7j620 , acif2-metx |
Title : Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6 - Lanie_2007_J.Bacteriol_189_38 |
Author(s) : Lanie JA , Ng WL , Kazmierczak KM , Andrzejewski TM , Davidsen TM , Wayne KJ , Tettelin H , Glass JI , Winkler ME |
Ref : Journal of Bacteriology , 189 :38 , 2007 |
Abstract : |
PubMedSearch : Lanie_2007_J.Bacteriol_189_38 |
PubMedID: 17041037 |
Gene_locus related to this paper: strp2-q04l35 , strpj-b8zns7 , strpn-AXE1 , strpn-b2dz20 , strpn-pepx , strpn-SP0614 , strpn-SP1343 |
Title : Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus - Myers_2007_Nat.Biotechnol_25_569 |
Author(s) : Myers GS , Parker D , Al-Hasani K , Kennan RM , Seemann T , Ren Q , Badger JH , Selengut JD , DeBoy RT , Tettelin H , Boyce JD , McCarl VP , Han X , Nelson WC , Madupu R , Mohamoud Y , Holley T , Fedorova N , Khouri H , Bottomley SP , Whittington RJ , Adler B , Songer JG , Rood JI , Paulsen IT |
Ref : Nat Biotechnol , 25 :569 , 2007 |
Abstract : |
PubMedSearch : Myers_2007_Nat.Biotechnol_25_569 |
PubMedID: 17468768 |
Gene_locus related to this paper: dicnv-a5evg0 , dicnv-a5ewn0 , dicnv-a5ewp3 |
Title : Comparative genomics of emerging human ehrlichiosis agents - Dunning Hotopp_2006_PLoS.Genet_2_e21 |
Author(s) : Dunning Hotopp JC , Lin M , Madupu R , Crabtree J , Angiuoli SV , Eisen JA , Seshadri R , Ren Q , Wu M , Utterback TR , Smith S , Lewis M , Khouri H , Zhang C , Niu H , Lin Q , Ohashi N , Zhi N , Nelson W , Brinkac LM , Dodson RJ , Rosovitz MJ , Sundaram J , Daugherty SC , Davidsen T , Durkin AS , Gwinn M , Haft DH , Selengut JD , Sullivan SA , Zafar N , Zhou L , Benahmed F , Forberger H , Halpin R , Mulligan S , Robinson J , White O , Rikihisa Y , Tettelin H |
Ref : PLoS Genet , 2 :e21 , 2006 |
Abstract : |
PubMedSearch : Dunning Hotopp_2006_PLoS.Genet_2_e21 |
PubMedID: 16482227 |
Gene_locus related to this paper: anapz-q2gj80 , anapz-q2gle9 , anapz-q2glf0 , anapz-q2gln7 , ehrch-q40iu0 , ehrch-q40jj7 , ehrcr-q2gfq9 , neosm-q2gcq8 , neosm-q2gdf2 , neosm-q2gcn8 , anapz-q2gk48 , ehrcr-q2ggj6 |
Title : Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes - Seshadri_2004_Proc.Natl.Acad.Sci.U.S.A_101_5646 |
Author(s) : Seshadri R , Myers GS , Tettelin H , Eisen JA , Heidelberg JF , Dodson RJ , Davidsen TM , DeBoy RT , Fouts DE , Haft DH , Selengut J , Ren Q , Brinkac LM , Madupu R , Kolonay J , Durkin SA , Daugherty SC , Shetty J , Shvartsbeyn A , Gebregeorgis E , Geer K , Tsegaye G , Malek J , Ayodeji B , Shatsman S , McLeod MP , Smajs D , Howell JK , Pal S , Amin A , Vashisth P , McNeill TZ , Xiang Q , Sodergren E , Baca E , Weinstock GM , Norris SJ , Fraser CM , Paulsen IT |
Ref : Proc Natl Acad Sci U S A , 101 :5646 , 2004 |
Abstract : |
PubMedSearch : Seshadri_2004_Proc.Natl.Acad.Sci.U.S.A_101_5646 |
PubMedID: 15064399 |
Gene_locus related to this paper: trede-q73j01 , trede-q73kf5 , trede-q73kp3 , trede-q73ks1 , trede-q73nf8 , trede-q73qt5 , trede-q73qv0 , trede-q73ra4 , trede-q73ri8 , trede-Q93EK3 , trede-TDE0521 |
Title : Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements - Wu_2004_PLoS.Biol_2_E69 |
Author(s) : Wu M , Sun LV , Vamathevan J , Riegler M , Deboy R , Brownlie JC , McGraw EA , Martin W , Esser C , Ahmadinejad N , Wiegand C , Madupu R , Beanan MJ , Brinkac LM , Daugherty SC , Durkin AS , Kolonay JF , Nelson WC , Mohamoud Y , Lee P , Berry K , Young MB , Utterback T , Weidman J , Nierman WC , Paulsen IT , Nelson KE , Tettelin H , O'Neill SL , Eisen JA |
Ref : PLoS Biol , 2 :E69 , 2004 |
Abstract : |
PubMedSearch : Wu_2004_PLoS.Biol_2_E69 |
PubMedID: 15024419 |
Gene_locus related to this paper: wolpm-q73gf0 , wolpm-q73gx7 |
Title : Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath) - Ward_2004_PLoS.Biol_2_e303 |
Author(s) : Ward N , Larsen O , Sakwa J , Bruseth L , Khouri H , Durkin AS , Dimitrov G , Jiang L , Scanlan D , Kang KH , Lewis M , Nelson KE , Methe B , Wu M , Heidelberg JF , Paulsen IT , Fouts D , Ravel J , Tettelin H , Ren Q , Read T , DeBoy RT , Seshadri R , Salzberg SL , Jensen HB , Birkeland NK , Nelson WC , Dodson RJ , Grindhaug SH , Holt I , Eidhammer I , Jonasen I , Vanaken S , Utterback T , Feldblyum TV , Fraser CM , Lillehaug JR , Eisen JA |
Ref : PLoS Biol , 2 :e303 , 2004 |
Abstract : |
PubMedSearch : Ward_2004_PLoS.Biol_2_e303 |
PubMedID: 15383840 |
Gene_locus related to this paper: metca-q60a38 , metca-q60bu6 , metca-q60cn0 , metca-q605j8 , metca-q606x9 , metca-q607f7 , metca-q607m2 , metca-q609v0 |
Title : Complete genome sequence of the Q-fever pathogen Coxiella burnetii - Seshadri_2003_Proc.Natl.Acad.Sci.U.S.A_100_5455 |
Author(s) : Seshadri R , Paulsen IT , Eisen JA , Read TD , Nelson KE , Nelson WC , Ward NL , Tettelin H , Davidsen TM , Beanan MJ , DeBoy RT , Daugherty SC , Brinkac LM , Madupu R , Dodson RJ , Khouri HM , Lee KH , Carty HA , Scanlan D , Heinzen RA , Thompson HA , Samuel JE , Fraser CM , Heidelberg JF |
Ref : Proc Natl Acad Sci U S A , 100 :5455 , 2003 |
Abstract : |
PubMedSearch : Seshadri_2003_Proc.Natl.Acad.Sci.U.S.A_100_5455 |
PubMedID: 12704232 |
Gene_locus related to this paper: coxbu-BIOH , coxbu-CBU0752 , coxbu-CBU1119 , coxbu-CBU1225 , coxbu-CBU1529 , coxbu-CBU1769 , coxbu-CBU1975 |
Title : Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis - Paulsen_2003_Science_299_2071 |
Author(s) : Paulsen IT , Banerjei L , Myers GS , Nelson KE , Seshadri R , Read TD , Fouts DE , Eisen JA , Gill SR , Heidelberg JF , Tettelin H , Dodson RJ , Umayam L , Brinkac L , Beanan M , Daugherty S , DeBoy RT , Durkin S , Kolonay J , Madupu R , Nelson W , Vamathevan J , Tran B , Upton J , Hansen T , Shetty J , Khouri H , Utterback T , Radune D , Ketchum KA , Dougherty BA , Fraser CM |
Ref : Science , 299 :2071 , 2003 |
Abstract : |
PubMedSearch : Paulsen_2003_Science_299_2071 |
PubMedID: 12663927 |
Gene_locus related to this paper: entfa-EF0101 , entfa-EF0274 , entfa-EF0381 , entfa-EF0449 , entfa-EF0667 , entfa-EF0786 , entfa-EF1028 , entfa-EF1236 , entfa-EF1505 , entfa-EF1536 , entfa-EF1670 , entfa-EF2618 , entfa-EF2728 , entfa-EF2792 , entfa-EF2963 , entfa-EF3191 |
Title : Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83 - Nelson_2003_J.Bacteriol_185_5591 |
Author(s) : Nelson KE , Fleischmann RD , DeBoy RT , Paulsen IT , Fouts DE , Eisen JA , Daugherty SC , Dodson RJ , Durkin AS , Gwinn M , Haft DH , Kolonay JF , Nelson WC , Mason T , Tallon L , Gray J , Granger D , Tettelin H , Dong H , Galvin JL , Duncan MJ , Dewhirst FE , Fraser CM |
Ref : Journal of Bacteriology , 185 :5591 , 2003 |
Abstract : |
PubMedSearch : Nelson_2003_J.Bacteriol_185_5591 |
PubMedID: 12949112 |
Gene_locus related to this paper: 9gamm-q4a538 , porgi-DPP , porgi-q7mtk3 , porgi-q7mu18 , porgi-q7mub3 , porgi-q7muw6 , porgi-q7mvp4 , porgi-q7mwa7 , porgi-q7mx03 |
Title : Complete genome sequence of a virulent isolate of Streptococcus pneumoniae - Tettelin_2001_Science_293_498 |
Author(s) : Tettelin H , Nelson KE , Paulsen IT , Eisen JA , Read TD , Peterson S , Heidelberg J , DeBoy RT , Haft DH , Dodson RJ , Durkin AS , Gwinn M , Kolonay JF , Nelson WC , Peterson JD , Umayam LA , White O , Salzberg SL , Lewis MR , Radune D , Holtzapple E , Khouri H , Wolf AM , Utterback TR , Hansen CL , McDonald LA , Feldblyum TV , Angiuoli S , Dickinson T , Hickey EK , Holt IE , Loftus BJ , Yang F , Smith HO , Venter JC , Dougherty BA , Morrison DA , Hollingshead SK , Fraser CM |
Ref : Science , 293 :498 , 2001 |
Abstract : |
PubMedSearch : Tettelin_2001_Science_293_498 |
PubMedID: 11463916 |
Gene_locus related to this paper: strp2-q04l35 , strpj-b8zns7 , strpn-AXE1 , strpn-b2dz20 , strpn-pepx , strpn-SP0614 , strpn-SP0666 , strpn-SP0777 , strpn-SP0902 , strpn-SP1343 |
Title : Complete genome sequence of Neisseria meningitidis serogroup B strain MC58 - Tettelin_2000_Science_287_1809 |
Author(s) : Tettelin H , Saunders NJ , Heidelberg J , Jeffries AC , Nelson KE , Eisen JA , Ketchum KA , Hood DW , Peden JF , Dodson RJ , Nelson WC , Gwinn ML , Deboy R , Peterson JD , Hickey EK , Haft DH , Salzberg SL , White O , Fleischmann RD , Dougherty BA , Mason T , Ciecko A , Parksey DS , Blair E , Cittone H , Clark EB , Cotton MD , Utterback TR , Khouri H , Qin H , Vamathevan J , Gill J , Scarlato V , Masignani V , Pizza M , Grandi G , Sun L , Smith HO , Fraser CM , Moxon ER , Rappuoli R , Venter JC |
Ref : Science , 287 :1809 , 2000 |
Abstract : |
PubMedSearch : Tettelin_2000_Science_287_1809 |
PubMedID: 10710307 |
Gene_locus related to this paper: neigo-pip , neima-metx , neimb-q9k0t9 , neime-ESD , neime-NMA2216 , neime-NMB0276 , neime-NMB0868 , neime-NMB1828 , neime-NMB1877 |
Title : DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae - Heidelberg_2000_Nature_406_477 |
Author(s) : Heidelberg JF , Eisen JA , Nelson WC , Clayton RA , Gwinn ML , Dodson RJ , Haft DH , Hickey EK , Peterson JD , Umayam L , Gill SR , Nelson KE , Read TD , Tettelin H , Richardson D , Ermolaeva MD , Vamathevan J , Bass S , Qin H , Dragoi I , Sellers P , McDonald L , Utterback T , Fleishmann RD , Nierman WC , White O , Salzberg SL , Smith HO , Colwell RR , Mekalanos JJ , Venter JC , Fraser CM |
Ref : Nature , 406 :477 , 2000 |
Abstract : |
PubMedSearch : Heidelberg_2000_Nature_406_477 |
PubMedID: 10952301 |
Gene_locus related to this paper: vibch-rtxAABH , vibch-lipas , vibch-VC0135 , vibch-VC0522 , vibch-VC1418 , vibch-VC1725 , vibch-VC1974 , vibch-VC1986 , vibch-VC2097 , vibch-VC2432 , vibch-VC2610 , vibch-VC2718 , vibch-VCA0063 , vibch-VCA0092 , vibch-VCA0490 , vibch-VCA0688 , vibch-VCA0754 , vibch-VCA0863 , vibch-y1892 , vibch-y2276 |
Title : The malaria genome sequencing project: complete sequence of Plasmodium falciparum chromosome 2 - Gardner_1999_Parassitologia_41_69 |
Author(s) : Gardner MJ , Tettelin H , Carucci DJ , Cummings LM , Smith HO , Fraser CM , Venter JC , Hoffman SL |
Ref : Parassitologia , 41 :69 , 1999 |
Abstract : |
PubMedSearch : Gardner_1999_Parassitologia_41_69 |
PubMedID: 10697835 |
Title : Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum - Gardner_1998_Science_282_1126 |
Author(s) : Gardner MJ , Tettelin H , Carucci DJ , Cummings LM , Aravind L , Koonin EV , Shallom S , Mason T , Yu K , Fujii C , Pederson J , Shen K , Jing J , Aston C , Lai Z , Schwartz DC , Pertea M , Salzberg S , Zhou L , Sutton GG , Clayton R , White O , Smith HO , Fraser CM , Hoffman SL |
Ref : Science , 282 :1126 , 1998 |
Abstract : |
PubMedSearch : Gardner_1998_Science_282_1126 |
PubMedID: 9804551 |
Title : The nucleotide sequence of Saccharomyces cerevisiae chromosome VII - Tettelin_1997_Nature_387_81 |
Author(s) : Tettelin H , Agostoni Carbone ML , Albermann K , Albers M , Arroyo J , Backes U , Barreiros T , Bertani I , Bjourson AJ , Bruckner M , Bruschi CV , Carignani G , Castagnoli L , Cerdan E , Clemente ML , Coblenz A , Coglievina M , Coissac E , Defoor E , Del Bino S , Delius H , Delneri D , de Wergifosse P , Dujon B , Kleine K , et al. |
Ref : Nature , 387 :81 , 1997 |
Abstract : |
PubMedSearch : Tettelin_1997_Nature_387_81 |
PubMedID: 9169869 |
Gene_locus related to this paper: yeast-ROG1 , yeast-SAY1 |
Title : Life with 6000 genes - Goffeau_1996_Science_274_563 |
Author(s) : Goffeau A , Barrell BG , Bussey H , Davis RW , Dujon B , Feldmann H , Galibert F , Hoheisel JD , Jacq C , Johnston M , Louis EJ , Mewes HW , Murakami Y , Philippsen P , Tettelin H , Oliver SG |
Ref : Science , 274 :546 , 1996 |
Abstract : |
PubMedSearch : Goffeau_1996_Science_274_563 |
PubMedID: 8849441 |
Gene_locus related to this paper: yeast-ATG15 , yeast-SAY1 |