Gene_Locus Report

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Gene_locus Report for: arath-SCP40

Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) SCPL40 At3g63470 serine carboxypeptidase-like protein

Relationship
Family|Carboxypeptidase_S10
Block| X
Position in NCBI Life Tree|Arabidopsis thaliana
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 2 more: AL163818, BT003126, AY087589
2 UniProt : Q0WRX3, D7LTR4
2 UniProt : Q0WRX3, D7LTR4
2 Interpro : Q0WRX3, D7LTR4
2 Prodom : Q0WRX3, D7LTR4
2 Pfam : Q0WRX3, D7LTR4
2 PIRSF : Q0WRX3, D7LTR4
2 SUPERFAM : Q0WRX3, D7LTR4
1 Tair database : At3g63470
Sequence
Graphical view for this peptide sequence: arath-SCP40
Colored MSA for Carboxypeptidase_S10 (raw)
MRKGQGYSYSVIASVLVLLCVVVSRIECSSQVHALSRLYLSKRGVGGSST
MDTSHFKAVKDLKPSSLRSAANQEGLRKRDLIRRLPGQPPVSFDQYGGYV
TVNESAGRSFFYYFVEASKSKDSSPLLLWLNGGPGCSSLAYGALQELGPF
RVHSDGKTLFRNRYAWNNAANVLFLESPAGVGFSYTNTTSDLEKHGDRNT
AADNYIFLVNWLERFPEYKGRDLYIAGESYAGHYVPQLAHTILLHHRSFF
NLKGILIGNAVINDETDLMGMYDFFESHALISEDSLARLKSNCDLKTESA
SVMTEECAVVSDQIDMDTYYLDIYNIYAPLCLNSTLTRRPKRGTTIREFD
PCSDHYVQAYLNRPEVQAALHANATKLPYEWQPCSSVIKKWNDSPTTVIP
LIKELMGQGVRVWVFSGDTDGRIPVTSTKYSLKKMNLTAKTAWHPWYLGG
EVGGYTEEYKGKLTFATVRGAGHQVPSFQPKRSLSLFIHFLNDTPLPDTS
RY
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MRKGQGYSYSVIASVLVLLCVVVSRIECSSQVHALSRLYLSKRGVGGSST
MDTSHFKAVKDLKPSSLRSAANQEGLRKRDLIRRLPGQPPVSFDQYGGYV
TVNESAGRSFFYYFVEASKSKDSSPLLLWLNGGPGCSSLAYGALQELGPF
RVHSDGKTLFRNRYAWNNAANVLFLESPAGVGFSYTNTTSDLEKHGDRNT
AADNYIFLVNWLERFPEYKGRDLYIAGESYAGHYVPQLAHTILLHHRSFF
NLKGILIGNAVINDETDLMGMYDFFESHALISEDSLARLKSNCDLKTESA
SVMTEECAVVSDQIDMDTYYLDIYNIYAPLCLNSTLTRRPKRGTTIREFD
PCSDHYVQAYLNRPEVQAALHANATKLPYEWQPCSSVIKKWNDSPTTVIP
LIKELMGQGVRVWVFSGDTDGRIPVTSTKYSLKKMNLTAKTAWHPWYLGG
EVGGYTEEYKGKLTFATVRGAGHQVPSFQPKRSLSLFIHFLNDTPLPDTS
RY


References
2 more
    Title: Empirical analysis of transcriptional activity in the Arabidopsis genome
    Yamada K, Lim J, Dale JM, Chen H, Shinn P, Palm CJ, Southwick AM, Wu HC, Kim C and Ecker JR <60 more author(s)>
    Ref: Science, 302:842, 2003 : PubMed

            

    Title: Full-length messenger RNA sequences greatly improve genome annotation
    Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL
    Ref: Genome Biol, 3:RESEARCH0029, 2002 : PubMed

            

    Title: Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana
    Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Blocker H, Perez-Alonso M and Tabata S <127 more author(s)>
    Ref: Nature, 408:820, 2000 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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