myctu-Rv1833c

 
Mycobacterium tuberculosis, Mycobacterium bovis, hypothetical protein Rv1833c Haloalkane_dehalogenase HLDIII, DmbC, dhmA2 Rv1833c

Comment
There are more than 3000 strains. Other Uniprot entries and list of strains can be found with the link: Other strains


Relationship
Block X
Mycobacterium tuberculosis position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Actinobacteria [phylum]: N E > Actinobacteria [class]: N E > Corynebacteriales: N E > Mycobacteriaceae: N E > Mycobacterium: N E > Mycobacterium tuberculosis complex: N E > Mycobacterium tuberculosis: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
>3 Genbank links 34 more: NP_216349, Z78020, BX842578
>3 UniProt links 2 more: P64304, A4Q9R7, A5U3K0
1 Ncbi-nid : 3261625
1 Ncbi-pid : 1483538
>3 UniProtTrembl links 3 more: P64304, A4Q9R7, A5U3K0
>3 Interpro links 3 more: P64304, A4Q9R7, A5U3K0
>3 Prodom links 3 more: P64304, A4Q9R7, A5U3K0
>3 Pfam links 3 more: P64304, A4Q9R7, A5U3K0
>3 PIRSF links 3 more: P64304, A4Q9R7, A5U3K0
>3 SUPERFAM links 3 more: P64304, A4Q9R7, A5U3K0
>3 QuickSwissBlast links 3 more: P64304, A4Q9R7, A5U3K0
 
Sequence
Graphical view for this peptide sequence: myctu-Rv1833c
Colored MSA for Haloalkane_dehalogenase-HLD1 (raw)
MSIDFTPDPQLYPFESRWFDSSRGRIHYVDEGTGPPILLCHGNPTWSFLY
RDIIVALRDRFRCVAPDYLGFGLSERPSGFGYQIDEHARVIGEFVDHLGL
DRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRV
MSSPPVQYAILRRNFFVERLIPAGTEHRPSSAVMAHYRAVQPNAAARRGV
AEMPKQILAARPLLARLAREVPATLGTKPTLLIWGMKDVAFRPKTIIPRL
SATFPDHVLVELPNAKHFIQEDAPDRIAAAIIERFG
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSIDFTPDPQLYPFESRWFDSSRGRIHYVDEGTGPPILLCHGNPTWSFLY
RDIIVALRDRFRCVAPDYLGFGLSERPSGFGYQIDEHARVIGEFVDHLGL
DRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRV
MSSPPVQYAILRRNFFVERLIPAGTEHRPSSAVMAHYRAVQPNAAARRGV
AEMPKQILAARPLLARLAREVPATLGTKPTLLIWGMKDVAFRPKTIIPRL
SATFPDHVLVELPNAKHFIQEDAPDRIAAAIIERFG

Graphical view for this nucleotide DNA sequence (894 bp): myctu-Rv1833c



References
6 more
    Title: Substrate specificity of haloalkane dehalogenases
    Koudelakova T, Chovancova E, Brezovsky J, Monincova M, Fortova A, Jarkovsky J, Damborsky J
    Ref: Biochemical Journal, 435:345, 2011 : PubMed

            

    Title: Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains
    Fleischmann RD, Alland D, Eisen JA, Carpenter L, White O, Peterson J, Deboy R, Dodson R, Gwinn M and Fraser CM <16 more author(s)>
    Ref: Journal of Bacteriology, 184:5479, 2002 : PubMed

            

    Title: Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
    Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, Harris D, Gordon SV, Eiglmeier K, Gas S and Barrell BG <32 more author(s)>
    Ref: Nature, 393:537, 1998 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
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