idesa-peth
Ideonella sakaiensis (strain 201-F6) (Piscinibacter sakaiensis)Poly(ethylene terephthalate) hydrolase (plastic degradation), PETase IsPETase ThermoPETase DuraPETase FastPETase
Comment
Polyethylene terephthalate is the most common thermoplastic polymer resin of the polyester family and is used in fibers for clothing, containers for liquids and foods. This enzyme hydrolyses PET in bis(2-hydroxyethyl)-TPA (BHET), MHET (Mono(ethylene terephthalate)), and TPA (Terephthalic-acid). (ThermoPETase, with only three mutations with respect to the wild-type homolog (S121E\/D186H\/R280A) Sonet al.2019)\; Cui et al. 2021 computationally redesigned PETase to provide a new variant (DuraPETase) which, after its synthesis, exhibited a high melting temperature (a Tm value of 77 C compared to that reported for PETase, Tm = 46 C) and strikingly enhanced degradation toward semicrystalline PET films at mild temperatures (over 300-fold)\;(HotPETase Bell 2022) Lu et al. 2022 designed the FAST-PETase with five mutations with respect to wild-type PETase (N233K\/R224Q\/S121E\/D186H\/R280A) and exhibits a superior catalytic activity in the 3050 C range compared to wild-type PETase and all other so far proposed mutants. FAST-PETase is able to completely biodegrade untreated and postconsumer PET waste from different products in 1 week. (Turbo PETase Cui et al. 2024)
Relationship
Family : Polyesterase-lipase-cutinase
Block : L
Position in NCBI Life Tree : Ideonella sakaiensis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms N E > Bacteria N E > Proteobacteria N E > Betaproteobacteria N E > Burkholderiales N E > unclassified Burkholderiales N E > Burkholderiales Genera incertae sedis N E > Ideonella N E > Ideonella sakaiensis N EMolecular evidence
No mutation
5XFY - Crystal structure of a novel PET hydrolase S131A mutant from Ideonella sakaiensis 201-F6
5XFZ - Crystal structure of a novel PET hydrolase R103G\/S131A mutant from Ideonella sakaiensis 201-F6
5XG0 - Crystal structure of a novel PET hydrolase from Ideonella sakaiensis 201-F6
5XH2 - Crystal structure of a novel PET hydrolase R103G\/S131A mutant in complex with pNP from Ideonella sakaiensis 201-F6
5XH3 - Crystal structure of a novel PET hydrolase R103G\/S131A mutant in complex with HEMT from Ideonella sakaiensis 201-F6
5XJH - Crystal strcuture of PETase from Ideonella sakaiensis
5YFE - Enzymatic and structural characterization of the poly (ethylene terephthalate) bacterial hydrolase PETase from Ideonella sakaiensis
5YNS - Crystal strcuture of PETase R280A mutant from Ideonella sakaiensis
6ANE - Active site flexibility as a hallmark for efficient PET degradation by Ideonella sakaiensis PETase
6EQD - Crystal structure of a polyethylene terephthalate degrading hydrolase from Ideonella sakaiensis collected at long wavelength
6EQE - High resolution crystal structure of a polyethylene terephthalate degrading hydrolase from Ideonella sakaiensis
6EQF - Crystal structure of a polyethylene terephthalate degrading hydrolase from Ideonella sakaiensis in spacegroup P212121
6EQG - Crystal structure of a polyethylene terephthalate degrading hydrolase from Ideonella sakaiensis in spacegroup P21
6EQH - Crystal structure of a polyethylene terephthalate degrading hydrolase from Ideonella sakaiensis in spacegroup C2221
6IJ3 - Crystal structure of PETase S121D, D186H mutant from Ideonella sakaiensis
6IJ4 - Crystal structure of PETase S121E, D186H mutant from Ideonella sakaiensis
6IJ5 - Crystal structure of PETase P181A mutant from Ideonella sakaiensis
6IJ6 - Crystal structure of PETase S121E, D186H, R280A mutant from Ideonella sakaiensis
6ILW - Crystal structure of PETase from Ideonella sakaiensis
6ILX - Crystal structure of PETase W159F mutant from Ideonella sakaiensis
6KUO - Crystal strcuture of PETase N246D mutant from Ideonella sakaiensis
6KUQ - Crystal strcuture of PETase A248D, R280K mutant from Ideonella sakaiensis
6KUS - Crystal strcuture of PETase S121E, D186H, S242T, N246D mutant from Ideonella sakaiensis
6KY5 - Crystal strcuture of PETase from Ideonella sakaiensis redesigned for plasticbiodegradation by GRAPE strategy T140D\/W159H\/I168R\/S188Q\/S214H\/L117F\/Q119Y DuraPETase
6QGC - Structure of a plastic degrading enzyme MHETase from Ideonella sakaiensis without ligand
7CQB - Crystal structure of mutant of a Petase mutant
7CY0 - Crystal structure of a new Petase triple mutant
7OSB - Crystal Structure of a Double Mutant PETase (S238F\/W159H) from Ideonella sakaiensis
7QVH - The crystal structure of HotPETase, an evolved thermostable variant of IsPETase
7SH6 - Crystal structure of a PET hydrolase mutant from Ideonella Sakaiensis
7VWN - The structure of an engineered PET hydrolase (variant of IsPETase Ideonella sakaiensis)
7XTW - Structure of Ideonella sakaiensis cutinase IsPETase, MHET-bound IsPETase S160A
8CRU - The crystal structure of GrAnc8, an evolved variant of IsPETase Ideonella sakaiensis Reconstruction 008
8D1D - The crystal structure of PROSS5 PETase, an evolved variant of IsPETase Ideonella sakaiensis
8GU4 - Poly(ethylene terephthalate) hydrolase IsPETase-linker Ideonella sakaiensis
8GU5 - Poly(ethylene terephthalate) hydrolase Wild type IsPETase Ideonella sakaiensis
8H5J - Crystal structure of PETase S121E\/A180V\/P181V\/D186H\/N233C\/S242T\/N246D\/S282C mutant from Ideonella sakaiensis
8H5K - Crystal structure of PETase N37D\/S121E\/R132E\/A171C\/A180V\/P181V\/D186H\/S193C\/R224E\/N233C\/S242T\/N246D\/S282C mutant from Ideonella sakaiensis
8H5L - Crystal structure of PETase N37D\/S121E\/R132E\/A171C\/A180V\/P181V\/D186H\/S193C\/A202C\/V211C\/S214Y\/R224E\/N233C\/S242T\/N246D\/N275C\/S282C\/F284C mutant from Ideonella sakaiensis
8H5M - Crystal structure of PETase S121E\/D186H\/N233C\/S242T\/N246D\/S282C mutant from Ideonella sakaiensis
8H5N - WITHDRAWN Crystal structure of PETase S121E\/A180V\/D186H\/N233C\/S242T\/N246D\/S282C mutant from Ideonella sakaiensis
8H5O - Crystal structure of PETase S121E\/P181V\/D186H\/N233C\/S242T\/N246D\/S282C mutant from Ideonella sakaiensis
8H83 - Crystal structure of a IsPETase variant V22 from Ideonella sakaiensis
8J17 - Structure of Ideonella sakaiensis cutinase IsPETase, thermostable S92P\/D157A variant
8J45 - Crystal structure of a Pichia pastoris-expressed IsPETase variant
8J5N - Crystal structure of a IsPETase variant V20 from Ideonella sakaiensis
8VE9 - Structure of Ideonella sakaiensis cutinase IsPETase - ACCCETN mutant - CombiPETase
8VEK - Structure of Ideonella sakaiensis cutinase IsPETase - ACC mutant
8VEL - Structure of Ideonella sakaiensis cutinase IsPETase - ACCCC mutant
8VEM - Structure of Ideonella sakaiensis cutinase IsPETase - ACCE mutant
No kinetic
No disease
Sequence
Peptide
MNFPRASRLM QAAVLGGLMA VSAAATAQTN PYARGPNPTA ASLEASAGPF TVRSFTVSRP SGYGAGTVYY PTNAGGTVGA IAIVPGYTAR QSSIKWWGPR LASHGFVVIT IDTNSTLDQP SSRSSQQMAA LRQVASLNGT SSSPIYGKVD TARMGVMGWS MGGGGSLISA ANNPSLKAAA PQAPWDSSTN FSSVTVPTLI FACENDSIAP VNSSALPIYD SMSRNAKQFL EINGGSHSCA NSGNSNQALI GKKGVAWMKR FMDNDTRYST FACENPNSTR VSDFRTANCS
References (71)
| Title : Efficient Depolymerization of Poly(ethylene 2,5-furanoate) Using Polyester Hydrolases - Kumar_2024_ACS.Sustain.Chem.Eng_12_9658 |
| Author(s) : Kumar V , Pellis A , Wimmer R , Popok V , Christiansen JC , Varrone C |
| Ref : ACS Sustain Chem Eng , 12 :9658 , 2024 |
| Abstract : |
| PubMedSearch : Kumar_2024_ACS.Sustain.Chem.Eng_12_9658 |
| PubMedID: 38966237 |
| Gene_locus related to this paper: idesa-peth , 9bact-g9by57 |
| Title : Molecular engineering of PETase for efficient PET biodegradation - Wang_2024_Ecotoxicol.Environ.Saf_280_116540 |
| Author(s) : Wang T , Yang WT , Gong YM , Zhang YK , Fan XX , Wang GC , Lu ZH , Liu F , Liu XH , Zhu YS |
| Ref : Ecotoxicology & Environmental Safety , 280 :116540 , 2024 |
| Abstract : |
| PubMedSearch : Wang_2024_Ecotoxicol.Environ.Saf_280_116540 |
| PubMedID: 38833982 |
| Gene_locus related to this paper: idesa-peth |
| Title : New Labeled PET Analogues Enable the Functional Screening and Characterization of PET-Degrading Enzymes - Taxeidis_2024_ACS.Sustain.Chem.Eng_12_5943 |
| Author(s) : Taxeidis G , Djapovic M , Nikolaivits E , Maslak V , Nikodinovic-Runic J , Topakas E |
| Ref : ACS Sustain Chem Eng , 12 :5943 , 2024 |
| Abstract : |
| PubMedSearch : Taxeidis_2024_ACS.Sustain.Chem.Eng_12_5943 |
| PubMedID: 38903150 |
| Gene_locus related to this paper: idesa-peth , 9bact-g9by57 , morsp-lip1 |
| Title : Exploring the substrate spectrum of phylogenetically distinct bacterial polyesterases - Makryniotis_2024_Biotechnol.J__e2400053 |
| Author(s) : Makryniotis K , Nikolaivits E , Taxeidis G , Nikodinovic-Runic J , Topakas E |
| Ref : Biotechnol J , :e2400053 , 2024 |
| Abstract : |
| PubMedSearch : Makryniotis_2024_Biotechnol.J__e2400053 |
| PubMedID: 38593303 |
| Gene_locus related to this paper: idesa-peth , comac-polest , strex-lipas , psefl-phaz |
| Title : The reaction mechanism of the Ideonella sakaiensis PETase enzyme - Burgin_2024_Commun.Chem_7_65 |
| Author(s) : Burgin T , Pollard BC , Knott BC , Mayes HB , Crowley MF , McGeehan JE , Beckham GT , Woodcock HL |
| Ref : Commun Chem , 7 :65 , 2024 |
| Abstract : |
| PubMedSearch : Burgin_2024_Commun.Chem_7_65 |
| PubMedID: 38538850 |
| Gene_locus related to this paper: idesa-peth |
| Title : Complete decomposition of poly(ethylene terephthalate) by crude PET hydrolytic enzyme produced in Pichia pastoris - Chen_2024_Chem.Eng.J_481_148418 |
| Author(s) : Chen CC , Li X , Min J , Zeng Z , Ning Z , He H , Long X , Niu D , Peng R , Liu X , Yang Y , Huang JW , Guo RT |
| Ref : Chemical Engineering Journal , 481 :148418 , 2024 |
| Abstract : |
| PubMedSearch : Chen_2024_Chem.Eng.J_481_148418 |
| PubMedID: |
| Gene_locus related to this paper: idesa-peth |
| Title : Conformational Selection of a Tryptophan Side Chain Drives the Generalized Increase in Activity of PET Hydrolases through a Ser\/Ile Double Mutation - Crnjar_2023_ACS.Org.Inorg.Au__ |
| Author(s) : Crnjar A , Grinen A , Kamerlin SCL , Ramirez-Sarmiento CA |
| Ref : ACS Organic & Inorganic Au , : , 2023 |
| Abstract : |
| PubMedSearch : Crnjar_2023_ACS.Org.Inorg.Au__ |
| PubMedID: |
| Gene_locus related to this paper: 9burk-a0a1f4jxw8 , idesa-peth , 9bact-g9by57 , thefu-q6a0i4 |
| Title : Complete Depolymerization of PET Wastes by an Evolved PET Hydrolase from Directed Evolution - Shi_2023_Angew.Chem.Int.Ed.Engl_62_e202218390 |
| Author(s) : Shi L , Liu P , Tan Z , Zhao W , Gao J , Gu Q , Ma H , Liu H , Zhu L |
| Ref : Angew Chem Int Ed Engl , 62 :e202218390 , 2023 |
| Abstract : |
| PubMedSearch : Shi_2023_Angew.Chem.Int.Ed.Engl_62_e202218390 |
| PubMedID: 36751696 |
| Gene_locus related to this paper: idesa-peth |
| Title : Conformational Selection of a Tryptophan Side Chain Drives the Generalized Increase in Activity of PET Hydrolases through a Ser\/Ile Double Mutation - Crnjar_2023_ACS.Org.Inorg.Au_3_109 |
| Author(s) : Crnjar A , Grinen A , Kamerlin SCL , Ramirez-Sarmiento CA |
| Ref : ACS Org Inorg Au , 3 :109 , 2023 |
| Abstract : |
| PubMedSearch : Crnjar_2023_ACS.Org.Inorg.Au_3_109 |
| PubMedID: 37035283 |
| Gene_locus related to this paper: idesa-peth |
| Title : Investigating the effects of cyclic topology on the performance of a plastic degrading enzyme for polyethylene terephthalate degradation - Hayes_2023_Sci.Rep_13_1267 |
| Author(s) : Hayes HC , Luk LYP |
| Ref : Sci Rep , 13 :1267 , 2023 |
| Abstract : |
| PubMedSearch : Hayes_2023_Sci.Rep_13_1267 |
| PubMedID: 36690710 |
| Gene_locus related to this paper: idesa-peth |
| Title : Improving the activity and thermostability of PETase from Ideonella sakaiensis through modulating its post-translational glycan modification - Deng_2023_Commun.Biol_6_39 |
| Author(s) : Deng B , Yue Y , Yang J , Yang M , Xing Q , Peng H , Wang F , Li M , Ma L , Zhai C |
| Ref : Commun Biol , 6 :39 , 2023 |
| Abstract : |
| PubMedSearch : Deng_2023_Commun.Biol_6_39 |
| PubMedID: 36639437 |
| Gene_locus related to this paper: idesa-peth |
| Title : Concentration-dependent inhibition of mesophilic PETases on poly(ethylene terephthalate) can be eliminated by enzyme engineering - Avilan_2023_ChemSusChem__e202202277 |
| Author(s) : Avilan L , Lichtenstein BR , Koenig G , Zahn M , Allen MD , Oliveira L , Clark M , Bemmer V , Graham R , Austin HP , Dominick G , Johnson CW , Beckham GT , McGeehan J , Pickford AR |
| Ref : ChemSusChem , :e202202277 , 2023 |
| Abstract : |
| PubMedSearch : Avilan_2023_ChemSusChem__e202202277 |
| PubMedID: 36811288 |
| Gene_locus related to this paper: psea4-u2z2l5 , 9gamm-a0a031mkr8 , 9burk-a0a1w6l438 , 9psed-a0a078mgg8 , pseol-e9kjl1 , 9burk-a0a0g3bi90 , 9burk-a0a1w6l588 , idesa-peth , acide-PBSA |
| Title : Computation-Based Design of Salt Bridges in PETase for Enhanced Thermostability and Performance for PET Degradation - Qu_2023_Chembiochem_24_e202300373 |
| Author(s) : Qu Z , Chen K , Zhang L , Sun Y |
| Ref : Chembiochem , 24 :e202300373 , 2023 |
| Abstract : |
| PubMedSearch : Qu_2023_Chembiochem_24_e202300373 |
| PubMedID: 37639367 |
| Gene_locus related to this paper: idesa-peth |
| Title : Efficient polyethylene terephthalate biodegradation by an engineered Ideonella sakaiensis PETase with a fixed substrate-binding W156 residue - ?Yin_2023_Green.Chemistry__ |
| Author(s) : Yin Q , Zhang J , Ma S , Gu T , Wang M , You S , Ye S , Su R , Wang Y , Qi W |
| Ref : Green Chemistry , : , 2023 |
| Abstract : |
| PubMedSearch : ?Yin_2023_Green.Chemistry__ |
| PubMedID: |
| Gene_locus related to this paper: idesa-peth |
| Title : Balance-directed protein engineering of IsPETase enhances both PET hydrolysis activity and thermostability - Lee_2023_bioRxiv__ |
| Author(s) : Lee SH , Seo H , Hong H , Park J , Ki D , Kim M , Kim HJ , Kim KJ |
| Ref : Biorxiv , : , 2023 |
| Abstract : |
| PubMedSearch : Lee_2023_bioRxiv__ |
| PubMedID: |
| Gene_locus related to this paper: idesa-peth |
| Title : Three-directional engineering of IsPETase with enhanced protein yield, activity, and durability - Lee_2023_J.Hazard.Mater_459_132297 |
| Author(s) : Lee SH , Seo H , Hong H , Park J , Ki D , Kim M , Kim HJ , Kim KJ |
| Ref : J Hazard Mater , 459 :132297 , 2023 |
| Abstract : |
| PubMedSearch : Lee_2023_J.Hazard.Mater_459_132297 |
| PubMedID: 37595467 |
| Gene_locus related to this paper: idesa-peth |
| Title : A PETase enzyme synthesised in the chloroplast of the microalga Chlamydomonas reinhardtii is active against post-consumer plastics - Di Rocco_2023_Sci.Rep_13_10028 |
| Author(s) : Di Rocco G , Taunt HN , Berto M , Jackson HO , Piccinini D , Carletti A , Scurani G , Braidi N , Purton S |
| Ref : Sci Rep , 13 :10028 , 2023 |
| Abstract : |
| PubMedSearch : Di Rocco_2023_Sci.Rep_13_10028 |
| PubMedID: 37340047 |
| Gene_locus related to this paper: idesa-peth |
| Title : Degradation of PET Bottles by an Engineered Ideonella sakaiensis PETase - Sevilla_2023_Polymers.(Basel)_15_1779 |
| Author(s) : Sevilla ME , Garcia MD , Perez-Castillo Y , Armijos-Jaramillo V , Casado S , Vizuete K , Debut A , Cerda-Mejia L |
| Ref : Polymers (Basel) , 15 :1779 , 2023 |
| Abstract : |
| PubMedSearch : Sevilla_2023_Polymers.(Basel)_15_1779 |
| PubMedID: 37050393 |
| Gene_locus related to this paper: idesa-peth |
| Title : Complete bio-degradation of poly(butylene adipate-co-terephthalate) via engineered cutinases - Yang_2023_Nat.Commun_14_1645 |
| Author(s) : Yang Y , Min J , Xue T , Jiang P , Liu X , Peng R , Huang JW , Qu Y , Li X , Ma N , Tsai FC , Dai L , Zhang Q , Liu Y , Chen CC , Guo RT |
| Ref : Nat Commun , 14 :1645 , 2023 |
| Abstract : |
| PubMedSearch : Yang_2023_Nat.Commun_14_1645 |
| PubMedID: 36964144 |
| Gene_locus related to this paper: idesa-peth , thefu-q6a0i4 |
| Title : Enhanced biodegradation of waste poly(ethylene terephthalate) using a reinforced plastic degrading enzyme complex - Hwang_2022_Sci.Total.Environ__156890 |
| Author(s) : Hwang DH , Lee ME , Cho BH , Oh JW , You SK , Ko YJ , Hyeon JE , Han SO |
| Ref : Sci Total Environ , :156890 , 2022 |
| Abstract : |
| PubMedSearch : Hwang_2022_Sci.Total.Environ__156890 |
| PubMedID: 35753492 |
| Gene_locus related to this paper: idesa-peth , canar-LipB |
| Title : Engineering and evaluation of thermostable IsPETase variants for PET degradation - Brott_2022_Eng.Life.Sci_22_192 |
| Author(s) : Brott S , Pfaff L , Schuricht J , Schwarz JN , Bottcher D , Badenhorst CPS , Wei R , Bornscheuer UT |
| Ref : Eng Life Sciences , 22 :192 , 2022 |
| Abstract : |
| PubMedSearch : Brott_2022_Eng.Life.Sci_22_192 |
| PubMedID: 35382549 |
| Gene_locus related to this paper: idesa-peth |
| Title : Machine Learning-Based Enzyme Engineering of PETase for Improved Efficiency in Degrading Non-Biodegradable Plastic - Gupta_2022_Biorxiv__ |
| Author(s) : Gupta A , Agrawal S |
| Ref : Biorxiv , : , 2022 |
| Abstract : |
| PubMedSearch : Gupta_2022_Biorxiv__ |
| PubMedID: |
| Gene_locus related to this paper: idesa-peth |
| Title : Reaction Pathways for the Enzymatic Degradation of Poly(Ethylene Terephthalate): What Characterizes an Efficient PET-Hydrolase? - Schubert_2022_Chembiochem__e202200516 |
| Author(s) : Schubert S , Schaller K , Baath JA , Hunt C , Borch K , Jensen K , Brask J , Westh P |
| Ref : Chembiochem , :e202200516 , 2022 |
| Abstract : |
| PubMedSearch : Schubert_2022_Chembiochem__e202200516 |
| PubMedID: 36399069 |
| Gene_locus related to this paper: idesa-peth , humin-cut , 9bact-g9by57 , thefu-q6a0i4 |
| Title : Overexpression and kinetic analysis of Ideonella sakaiensis PETase for polyethylene terephthalate (PET) degradation - Aer_2022_Environ.Res_212_113472 |
| Author(s) : Aer L , Jiang Q , Gul I , Qi Z , Feng J , Tang L |
| Ref : Environ Research , 212 :113472 , 2022 |
| Abstract : |
| PubMedSearch : Aer_2022_Environ.Res_212_113472 |
| PubMedID: 35577005 |
| Gene_locus related to this paper: idesa-peth |
| Title : QM\/MM Investigation to Identify the Hallmarks of Superior PET Biodegradation Activity of PETase over Cutinase - Aboelnga_2022_ACS.Sustain.Chem.Eng_10_15857 |
| Author(s) : Aboelnga MM , Kalyaanamoorthy S |
| Ref : ACS Sustain Chem Eng , 10 :15857 , 2022 |
| Abstract : |
| PubMedSearch : Aboelnga_2022_ACS.Sustain.Chem.Eng_10_15857 |
| PubMedID: |
| Gene_locus related to this paper: idesa-peth , thefu-q6a0i4 |
| Title : Comparative performance of PETase as a function of reaction conditions, substrate properties, and product accumulation - Erickson_2022_ChemSusChem_15_e202101932 |
| Author(s) : Erickson E , Shakespeare TJ , Bratti F , Buss BL , Graham R , Hawkins MA , Konig G , Michener WE , Miscall J , Ramirez KJ , Rorrer NA , Zahn M , Pickford AR , McGeehan JE , Beckham G |
| Ref : ChemSusChem , 15 : , 2022 |
| Abstract : |
| PubMedSearch : Erickson_2022_ChemSusChem_15_e202101932 |
| PubMedID: 34587366 |
| Gene_locus related to this paper: idesa-peth |
| Title : Rapid depolymerization of poly(ethylene terephthalate) thin films by a dual-enzyme system and its impact on material properties - Tarazona_2022_Chem.Catal_2_3573 |
| Author(s) : Tarazona NA , Wei R , Brott S , Pfaff L , Bornscheuer UT , Lendlein A , Machatschek R |
| Ref : Chem Catal , 2 :3573 , 2022 |
| Abstract : |
| PubMedSearch : Tarazona_2022_Chem.Catal_2_3573 |
| PubMedID: 37350932 |
| Gene_locus related to this paper: idesa-mheth , idesa-peth |
| Title : Directed evolution of an efficient and thermostable PET depolymerase - Bell_2022_Nat.Catal_5_673 |
| Author(s) : Bell EL , Smithson R , Kilbride S , Foster J , Hardy FJ , Ramachandran S , Tedstone AA , Haigh SJ , Garforth AA , Day PJR , Levy C , Shaver MP , Green AP |
| Ref : Nature Catalysis , 5 :673 , 2022 |
| Abstract : |
| PubMedSearch : Bell_2022_Nat.Catal_5_673 |
| PubMedID: |
| Gene_locus related to this paper: idesa-peth |
| Title : Ancestral Sequence Reconstruction Identifies Structural Changes Underlying the Evolution of Ideonella sakaiensis PETase and Variants with Improved Stability and Activity - Joho_2022_Biochemistry__ |
| Author(s) : Joho Y , Vongsouthi V , Spence MA , Ton J , Gomez C , Tan LL , Kaczmarski JA , Caputo AT , Royan S , Jackson CJ , Ardevol A |
| Ref : Biochemistry , : , 2022 |
| Abstract : |
| PubMedSearch : Joho_2022_Biochemistry__ |
| PubMedID: 35951410 |
| Gene_locus related to this paper: idesa-peth |
| Title : In Silico Identification of Potential Sites for a Plastic-Degrading Enzyme by a Reverse Screening through the Protein Sequence Space and Molecular Dynamics Simulations - Charupanit_2022_Molecules_27_ |
| Author(s) : Charupanit K , Tipmanee V , Sutthibutpong T , Limsakul P |
| Ref : Molecules , 27 : , 2022 |
| Abstract : |
| PubMedSearch : Charupanit_2022_Molecules_27_ |
| PubMedID: 35630830 |
| Gene_locus related to this paper: idesa-peth |
| Title : Machine learning-aided engineering of hydrolases for PET depolymerization - Lu_2022_Nature_604_662 |
| Author(s) : Lu H , Diaz DJ , Czarnecki NJ , Zhu C , Kim W , Shroff R , Acosta DJ , Alexander BR , Cole HO , Zhang Y , Lynd NA , Ellington AD , Alper HS |
| Ref : Nature , 604 :662 , 2022 |
| Abstract : |
| PubMedSearch : Lu_2022_Nature_604_662 |
| PubMedID: 35478237 |
| Gene_locus related to this paper: idesa-peth |
| Title : Biodegradation of highly crystallized poly(ethylene terephthalate) through cell surface codisplay of bacterial PETase and hydrophobin - Chen_2022_Nat.Commun_13_7138 |
| Author(s) : Chen Z , Duan R , Xiao Y , Wei Y , Zhang H , Sun X , Wang S , Cheng Y , Wang X , Tong S , Yao Y , Zhu C , Yang H , Wang Y , Wang Z |
| Ref : Nat Commun , 13 :7138 , 2022 |
| Abstract : |
| PubMedSearch : Chen_2022_Nat.Commun_13_7138 |
| PubMedID: 36414665 |
| Gene_locus related to this paper: idesa-peth |
| Title : Directed Evolution of an Efficient and Thermostable PET Depolymerase - Bell_2021_Chemrxiv__ |
| Author(s) : Bell E , Smithson R , Kilbride S , Foster J , Hardy F , Ramachandran S , Tedstone A , Haigh S , Garforth A , Day P , Levy C , Shaver M , Green A |
| Ref : Chemrxiv , : , 2021 |
| Abstract : |
| PubMedSearch : Bell_2021_Chemrxiv__ |
| PubMedID: |
| Gene_locus related to this paper: idesa-peth |
| Title : Computational redesign of a PETase for plastic biodegradation under ambient condition by the GRAPE strategy - Cui_2021_ACS.Catal_11_1340 |
| Author(s) : Cui Y , Chen Y , Liu X , Dong S , Tian Y , Qiao Y , Mitra R , Han J , Li C , Han X |
| Ref : ACS Catal , 11 :1340 , 2021 |
| Abstract : |
| PubMedSearch : Cui_2021_ACS.Catal_11_1340 |
| PubMedID: |
| Gene_locus related to this paper: idesa-peth |
| Title : Reaction Mechanism of the PET Degrading Enzyme PETase Studied with DFT\/MM Molecular Dynamics Simulations - Jerves_2021_ACS.Catal_11_11626 |
| Author(s) : Jerves C , Neves RPP , Ramos MJ , da Silva S , Fernandes PA |
| Ref : ACS Catal , 11 :11626 , 2021 |
| Abstract : |
| PubMedSearch : Jerves_2021_ACS.Catal_11_11626 |
| PubMedID: |
| Gene_locus related to this paper: idesa-peth |
| Title : An Efficient Protein Evolution Workflow for the Improvement of Bacterial PET Hydrolyzing Enzymes - Pirillo_2021_Int.J.Mol.Sci_23_ |
| Author(s) : Pirillo V , Orlando M , Tessaro D , Pollegioni L , Molla G |
| Ref : Int J Mol Sci , 23 : , 2021 |
| Abstract : |
| PubMedSearch : Pirillo_2021_Int.J.Mol.Sci_23_ |
| PubMedID: 35008691 |
| Gene_locus related to this paper: idesa-peth |
| Title : Deep learning redesign of PETase for practical PET degrading applications - Lu_2021_Biorxiv__ |
| Author(s) : Lu H , Diaz DJ , Czarnecki NJ , Zhu C , Kim W , Shroff R , Acosta DJ , Alexander B , Cole H , Zhang YJ , Lynd N , Ellington AD , Alper HS |
| Ref : Biorxiv , : , 2021 |
| Abstract : |
| PubMedSearch : Lu_2021_Biorxiv__ |
| PubMedID: |
| Gene_locus related to this paper: idesa-peth |
| Title : Adsorption of enzymes with hydrolytic activity on polyethylene terephthalate - Badino_2021_Enzyme.Microb.Technol_152_109937 |
| Author(s) : Badino SF , Baath JA , Borch K , Jensen K , Westh P |
| Ref : Enzyme Microb Technol , 152 :109937 , 2021 |
| Abstract : |
| PubMedSearch : Badino_2021_Enzyme.Microb.Technol_152_109937 |
| PubMedID: 34749019 |
| Gene_locus related to this paper: idesa-peth , humin-cut , thefu-q6a0i4 |
| Title : Perspectives on the Role of Enzymatic Biocatalysis for the Degradation of Plastic PET - Magalhaes_2021_Int.J.Mol.Sci_22_11257 |
| Author(s) : Magalhaes RP , Cunha JM , Sousa SF |
| Ref : Int J Mol Sci , 22 :11257 , 2021 |
| Abstract : |
| PubMedSearch : Magalhaes_2021_Int.J.Mol.Sci_22_11257 |
| PubMedID: 34681915 |
| Gene_locus related to this paper: 9entr-EsEstB , 9bact-a0a2h5z9r5 , 9psed-peh , 9actn-h6wx58 , idesa-mheth , idesa-peth , thecd-d1a2h1 , humin-cut , 9acto-d4q9n1 , 9acto-f7ix06 , 9bact-g9by57 , bacsu-lip , bacsu-pnbae , canar-LipB , thela-m4tp71 , psemy-a4y035 , thefu-1831 , thefu-q6a0i4 , strsw-c9zcr8 , fusox-CUT , sacvd-c7mve8 |
| Title : Surface display as a functional screening platform for detecting enzymes active on PET - Heyde_2021_Microb.Cell.Fact_20_93 |
| Author(s) : Heyde SAH , Arnling Baath J , Westh P , Norholm MHH , Jensen K |
| Ref : Microb Cell Fact , 20 :93 , 2021 |
| Abstract : |
| PubMedSearch : Heyde_2021_Microb.Cell.Fact_20_93 |
| PubMedID: 33933097 |
| Gene_locus related to this paper: idesa-peth |
| Title : General features to enhance enzymatic activity of poly(ethylene terephthalate) hydrolysis - Chen_2021_Nat.Catal_4_425 |
| Author(s) : Chen CC , Han X , Li X , Jiang P , Niu D , Ma L , Liu W , Li S , Qu Y , Hu H , Min J , Yang Y , Zhang L , Zeng W , Huang JW , Dai L , Guo RT , Chen, CC |
| Ref : Nature Catalysis , 4 :425 , 2021 |
| Abstract : |
| PubMedSearch : Chen_2021_Nat.Catal_4_425 |
| PubMedID: |
| Gene_locus related to this paper: 9burk-a0a1f4jxw8 , idesa-peth |
| Title : QM\/MM Study of the Enzymatic Biodegradation Mechanism of Polyethylene Terephthalate - Boneta_2021_J.Chem.Inf.Model__ |
| Author(s) : Boneta S , Arafet K , Moliner V |
| Ref : J Chem Inf Model , : , 2021 |
| Abstract : |
| PubMedSearch : Boneta_2021_J.Chem.Inf.Model__ |
| PubMedID: 34085821 |
| Gene_locus related to this paper: idesa-peth , 9bact-g9by57 |
| Title : Assessment of the PETase conformational changes induced by poly(ethylene terephthalate) binding - da Costa_2021_Proteins__ |
| Author(s) : da Costa CHS , Dos Santos AM , Alves CN , Marti S , Moliner V , Santana K , Lameira J |
| Ref : Proteins , : , 2021 |
| Abstract : |
| PubMedSearch : da Costa_2021_Proteins__ |
| PubMedID: 34075621 |
| Gene_locus related to this paper: idesa-peth |
| Title : Yeast cell surface display of bacterial PET hydrolase as a sustainable biocatalyst for the degradation of polyethylene terephthalate - Chen_2021_Methods.Enzymol_648_457 |
| Author(s) : Chen Z , Xiao Y , Weber G , Wei R , Wang Z |
| Ref : Methods Enzymol , 648 :457 , 2021 |
| Abstract : |
| PubMedSearch : Chen_2021_Methods.Enzymol_648_457 |
| PubMedID: 33579416 |
| Gene_locus related to this paper: idesa-peth |
| Title : Enhancing PET hydrolytic enzyme activity by fusion of the cellulose-binding domain of cellobiohydrolase I from Trichoderma reesei - Dai_2021_J.Biotechnol_334_47 |
| Author(s) : Dai L , Qu Y , Huang JW , Hu Y , Hu H , Li S , Chen CC , Guo RT |
| Ref : J Biotechnol , 334 :47 , 2021 |
| Abstract : |
| PubMedSearch : Dai_2021_J.Biotechnol_334_47 |
| PubMedID: 34044062 |
| Gene_locus related to this paper: idesa-peth |
| Title : Protein engineering of stable IsPETase for PET plastic degradation by Premuse - Meng_2021_Int.J.Biol.Macromol_180_667 |
| Author(s) : Meng X , Yang L , Liu H , Li Q , Xu G , Zhang Y , Guan F , Zhang W , Wu N , Tian J |
| Ref : Int J Biol Macromol , 180 :667 , 2021 |
| Abstract : |
| PubMedSearch : Meng_2021_Int.J.Biol.Macromol_180_667 |
| PubMedID: 33753197 |
| Gene_locus related to this paper: idesa-peth |
| Title : Class I hydrophobins pretreatment stimulates PETase for monomers recycling of waste PETs - Puspitasari_2021_Int.J.Biol.Macromol_176_157 |
| Author(s) : Puspitasari N , Tsai SL , Lee CK |
| Ref : Int J Biol Macromol , 176 :157 , 2021 |
| Abstract : |
| PubMedSearch : Puspitasari_2021_Int.J.Biol.Macromol_176_157 |
| PubMedID: 33561457 |
| Gene_locus related to this paper: idesa-peth |
| Title : Enhanced Extracellular Production of IsPETase in Escherichia coli via Engineering of the pelB Signal Peptide - Shi_2021_J.Agric.Food.Chem_69_2245 |
| Author(s) : Shi L , Liu H , Gao S , Weng Y , Zhu L |
| Ref : Journal of Agricultural and Food Chemistry , 69 :2245 , 2021 |
| Abstract : |
| PubMedSearch : Shi_2021_J.Agric.Food.Chem_69_2245 |
| PubMedID: 33576230 |
| Gene_locus related to this paper: idesa-peth |
| Title : GRAPE, a greedy accumulated strategy for computational protein engineering - Sun_2021_Methods.Enzymol_648_207 |
| Author(s) : Sun J , Cui Y , Wu B |
| Ref : Methods Enzymol , 648 :207 , 2021 |
| Abstract : |
| PubMedSearch : Sun_2021_Methods.Enzymol_648_207 |
| PubMedID: 33579404 |
| Gene_locus related to this paper: idesa-peth |
| Title : An absorbance method for analysis of enzymatic degradation kinetics of poly(ethylene terephthalate) films - Zhong-Johnson_2021_Sci.Rep_11_928 |
| Author(s) : Zhong-Johnson EZL , Voigt CA , Sinskey AJ |
| Ref : Sci Rep , 11 :928 , 2021 |
| Abstract : |
| PubMedSearch : Zhong-Johnson_2021_Sci.Rep_11_928 |
| PubMedID: 33441590 |
| Gene_locus related to this paper: idesa-peth |
| Title : Structural analysis of PET-degrading enzymes PETase and MHETase from Ideonella sakaiensis - Graf_2021_Methods.Enzymol_648_337 |
| Author(s) : Graf LG , Michels EAP , Yew Y , Liu W , Palm GJ , Weber G |
| Ref : Methods Enzymol , 648 :337 , 2021 |
| Abstract : |
| PubMedSearch : Graf_2021_Methods.Enzymol_648_337 |
| PubMedID: 33579411 |
| Gene_locus related to this paper: idesa-mheth , idesa-peth |
| Title : Development of a targeted gene disruption system in the PET-degrading bacterium Ideonella sakaiensis and its applications to PETase and MHETase genes - Hachisuka_2021_Appl.Environ.Microbiol__AEM0002021 |
| Author(s) : Hachisuka SI , Nishii T , Yoshida S |
| Ref : Applied Environmental Microbiology , :AEM0002021 , 2021 |
| Abstract : |
| PubMedSearch : Hachisuka_2021_Appl.Environ.Microbiol__AEM0002021 |
| PubMedID: 34260304 |
| Gene_locus related to this paper: idesa-mheth , idesa-peth |
| Title : Tandem chemical deconstruction and biological upcycling of poly(ethylene terephthalate) to beta-ketoadipic acid by Pseudomonas putida KT2440 - Werner_2021_Metab.Eng_67_250 |
| Author(s) : Werner AZ , Clare R , Mand TD , Pardo I , Ramirez KJ , Haugen SJ , Bratti F , Dexter GN , Elmore JR , Huenemann JD , Peabody GLt , Johnson CW , Rorrer NA , Salvachua D , Guss AM , Beckham GT |
| Ref : Metab Eng , 67 :250 , 2021 |
| Abstract : |
| PubMedSearch : Werner_2021_Metab.Eng_67_250 |
| PubMedID: 34265401 |
| Gene_locus related to this paper: idesa-mheth , idesa-peth |
| Title : Ideonella sakaiensis, PETase, and MHETase: From identification of microbial PET degradation to enzyme characterization - Yoshida_2021_Methods.Enzymol_648_187 |
| Author(s) : Yoshida S , Hiraga K , Taniguchi I , Oda K |
| Ref : Methods Enzymol , 648 :187 , 2021 |
| Abstract : |
| PubMedSearch : Yoshida_2021_Methods.Enzymol_648_187 |
| PubMedID: 33579403 |
| Gene_locus related to this paper: idesa-mheth , idesa-peth |
| Title : Comparative biochemistry of four polyester (PET) hydrolases - Baath_2020_Chembiochem_22_1627 |
| Author(s) : Baath JA , Borch K , Jensen K , Brask J , Westh P |
| Ref : Chembiochem , 22 :1627 , 2020 |
| Abstract : |
| PubMedSearch : Baath_2020_Chembiochem_22_1627 |
| PubMedID: 33351214 |
| Gene_locus related to this paper: idesa-peth |
| Title : Computational redesign of a PETase for plastic biodegradation by the GRAPE strategy - Cui_2020_Biorxiv__ |
| Author(s) : Cui YL , Chen YC , Liu XY , Dong SJ , Han J , Xiang H , Chen Q , Liu HY , Han X , Liu WD , Tang SY , Wu B |
| Ref : Biorxiv , : , 2020 |
| Abstract : |
| PubMedSearch : Cui_2020_Biorxiv__ |
| PubMedID: |
| Gene_locus related to this paper: idesa-peth |
| Title : Recent advances in biocatalysts engineering for polyethylene terephthalate plastic waste green recycling - Samak_2020_Environ.Int_145_106144 |
| Author(s) : Samak NA , Jia Y , Sharshar MM , Mu T , Yang M , Peh S , Xing J |
| Ref : Environ Int , 145 :106144 , 2020 |
| Abstract : |
| PubMedSearch : Samak_2020_Environ.Int_145_106144 |
| PubMedID: 32987219 |
| Gene_locus related to this paper: idesa-peth , 9bact-g9by57 |
| Title : Structural and functional characterization of polyethylene terephthalate hydrolase from Ideonella sakaiensis - Liu_2019_Biochem.Biophys.Res.Commun_508_289 |
| Author(s) : Liu C , Shi C , Zhu S , Wei R , Yin CC |
| Ref : Biochemical & Biophysical Research Communications , 508 :289 , 2019 |
| Abstract : |
| PubMedSearch : Liu_2019_Biochem.Biophys.Res.Commun_508_289 |
| PubMedID: 30502092 |
| Gene_locus related to this paper: idesa-peth |
| Title : Biodegradation of waste PET: A sustainable solution for dealing with plastic pollution - Hiraga_2019_EMBO.Rep_20_e49365 |
| Author(s) : Hiraga K , Taniguchi I , Yoshida S , Kimura Y , Oda K |
| Ref : EMBO Rep , 20 :e49365 , 2019 |
| Abstract : |
| PubMedSearch : Hiraga_2019_EMBO.Rep_20_e49365 |
| PubMedID: 31646721 |
| Gene_locus related to this paper: idesa-peth |
| Title : Rational Protein Engineering of Thermo-Stable PETase from Ideonella sakaiensis for Highly Efficient PET Degradation - Son_2019_ACS.Catal_9_3519 |
| Author(s) : Son HF , Cho IJ , Joo S , Seo H , Sagong HY , Choi SY , Lee SY , Kim KJ |
| Ref : ACS Catal , 9 :3519 , 2019 |
| Abstract : |
| PubMedSearch : Son_2019_ACS.Catal_9_3519 |
| PubMedID: |
| Gene_locus related to this paper: idesa-mheth , idesa-peth |
| Title : Enhanced Poly(ethylene terephthalate) Hydrolase Activity by Protein Engineering - Ma_2018_Engineering.(Beijing)_4_888 |
| Author(s) : Ma Y , Yao M , Li B , Ding M , He B , Chen S , Zhou X , Yuan Y |
| Ref : Engineering (Beijing) , 4 :888 , 2018 |
| Abstract : |
| PubMedSearch : Ma_2018_Engineering.(Beijing)_4_888 |
| PubMedID: |
| Gene_locus related to this paper: idesa-peth |
| Title : Active Site Flexibility as a Hallmark for Efficient PET Degradation by I. sakaiensis PETase - Fecker_2018_Biophys.J_114_1302 |
| Author(s) : Fecker T , Galaz-Davison P , Engelberger F , Narui Y , Sotomayor M , Parra LP , Ramirez-Sarmiento CA |
| Ref : Biophysical Journal , 114 :1302 , 2018 |
| Abstract : |
| PubMedSearch : Fecker_2018_Biophys.J_114_1302 |
| PubMedID: 29590588 |
| Gene_locus related to this paper: idesa-peth |
| Title : Characterization and engineering of a plastic-degrading aromatic polyesterase - Austin_2018_Proc.Natl.Acad.Sci.U.S.A_115_E4350 |
| Author(s) : Austin HP , Allen MD , Donohoe BS , Rorrer NA , Kearns FL , Silveira RL , Pollard BC , Dominick G , Duman R , El Omari K , Mykhaylyk V , Wagner A , Michener WE , Amore A , Skaf MS , Crowley MF , Thorne AW , Johnson CW , Woodcock HL , McGeehan JE , Beckham GT |
| Ref : Proc Natl Acad Sci U S A , 115 :E4350 , 2018 |
| Abstract : |
| PubMedSearch : Austin_2018_Proc.Natl.Acad.Sci.U.S.A_115_E4350 |
| PubMedID: 29666242 |
| Gene_locus related to this paper: idesa-peth |
| Title : Structural insight into molecular mechanism of poly(ethylene terephthalate) degradation - Joo_2018_Nat.Commun_9_382 |
| Author(s) : Joo S , Cho IJ , Seo H , Son HF , Sagong HY , Shin TJ , Choi SY , Lee SY , Kim KJ |
| Ref : Nat Commun , 9 :382 , 2018 |
| Abstract : |
| PubMedSearch : Joo_2018_Nat.Commun_9_382 |
| PubMedID: 29374183 |
| Gene_locus related to this paper: idesa-peth |
| Title : Protein Crystallography and Site-Direct Mutagenesis Analysis of the Poly(ethylene terephthalate) Hydrolase PETase from Ideonella sakaiensis - Liu_2018_Chembiochem_19_1471 |
| Author(s) : Liu B , He L , Wang L , Li T , Li C , Liu H , Luo Y , Bao R |
| Ref : Chembiochem , 19 :1471 , 2018 |
| Abstract : |
| PubMedSearch : Liu_2018_Chembiochem_19_1471 |
| PubMedID: 29603535 |
| Gene_locus related to this paper: idesa-peth |
| Title : New insights into the function and global distribution of polyethylene terephthalate (PET) degrading bacteria and enzymes in marine and terrestrial metagenomes - Danso_2018_Appl.Environ.Microbiol_84_e2773 |
| Author(s) : Danso D , Schmeisser C , Chow J , Zimmermann W , Wei R , Leggewie C , Li X , Hazen T , Streit WR |
| Ref : Applied Environmental Microbiology , 84 :e2773 , 2018 |
| Abstract : |
| PubMedSearch : Danso_2018_Appl.Environ.Microbiol_84_e2773 |
| PubMedID: 29427431 |
| Gene_locus related to this paper: 9burk-PET10 , 9burk-PET11 , 9gamm-a0a0d4l7e6 , 9alte-n6vy44 , 9zzzz-a0a0f9x315 , deiml-e8u721 , olean-r4ykl9 , vibga-a0a1z2siq1 , 9burk-a0a0g3bi90 , 9bact-c3ryl0 , 9actn-h6wx58 , idesa-peth , 9bact-g9by57 , acide-PBSA , morsp-lip1 |
| Title : Structural insight into catalytic mechanism of PET hydrolase - Han_2017_Nat.Commun_8_2106 |
| Author(s) : Han X , Liu W , Huang JW , Ma J , Zheng Y , Ko TP , Xu L , Cheng YS , Chen CC , Guo RT |
| Ref : Nat Commun , 8 :2106 , 2017 |
| Abstract : |
| PubMedSearch : Han_2017_Nat.Commun_8_2106 |
| PubMedID: 29235460 |
| Gene_locus related to this paper: idesa-peth |
| Title : Ideonella sakaiensis sp. nov., isolated from a microbial consortium that degrades poly(ethylene terephthalate) - Tanasupawat_2016_Int.J.Syst.Evol.Microbiol_66_2813 |
| Author(s) : Tanasupawat S , Takehana T , Yoshida S , Hiraga K , Oda K |
| Ref : Int J Syst Evol Microbiol , 66 :2813 , 2016 |
| Abstract : |
| PubMedSearch : Tanasupawat_2016_Int.J.Syst.Evol.Microbiol_66_2813 |
| PubMedID: 27045688 |
| Gene_locus related to this paper: idesa-peth |
| Title : Comment on A bacterium that degrades and assimilates poly(ethylene terephthalate) - Yang_2016_Science_353_759 |
| Author(s) : Yang Y , Yang J , Jiang L |
| Ref : Science , 353 :759 , 2016 |
| Abstract : |
| PubMedSearch : Yang_2016_Science_353_759 |
| PubMedID: 27540159 |
| Gene_locus related to this paper: idesa-peth |
| Title : Response to Comment on A bacterium that degrades and assimilates poly(ethylene terephthalate) - Yoshida_2016_Science_353_759 |
| Author(s) : Yoshida S , Hiraga K , Takehana T , Taniguchi I , Yamaji H , Maeda Y , Toyohara K , Miyamoto K , Kimura Y , Oda K |
| Ref : Science , 353 :759 , 2016 |
| Abstract : |
| PubMedSearch : Yoshida_2016_Science_353_759 |
| PubMedID: 27540160 |
| Gene_locus related to this paper: idesa-peth |
| Title : A bacterium that degrades and assimilates poly(ethylene terephthalate) - Yoshida_2016_Science_351_1196 |
| Author(s) : Yoshida S , Hiraga K , Takehana T , Taniguchi I , Yamaji H , Maeda Y , Toyohara K , Miyamoto K , Kimura Y , Oda K |
| Ref : Science , 351 :1196 , 2016 |
| Abstract : |
| PubMedSearch : Yoshida_2016_Science_351_1196 |
| PubMedID: 26965627 |
| Gene_locus related to this paper: idesa-mheth , idesa-peth |