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Berriman M

References (29)

Title : The genomic basis of parasitism in the Strongyloides clade of nematodes - Hunt_2016_Nat.Genet_48_299
Author(s) : Hunt VL , Tsai IJ , Coghlan A , Reid AJ , Holroyd N , Foth BJ , Tracey A , Cotton JA , Stanley EJ , Beasley H , Bennett HM , Brooks K , Harsha B , Kajitani R , Kulkarni A , Harbecke D , Nagayasu E , Nichol S , Ogura Y , Quail MA , Randle N , Xia D , Brattig NW , Soblik H , Ribeiro DM , Sanchez-Flores A , Hayashi T , Itoh T , Denver DR , Grant W , Stoltzfus JD , Lok JB , Murayama H , Wastling J , Streit A , Kikuchi T , Viney M , Berriman M
Ref : Nat Genet , 48 :299 , 2016
Abstract :
PubMedSearch : Hunt_2016_Nat.Genet_48_299
PubMedID: 26829753
Gene_locus related to this paper: 9bila-a0a1i8c9u2 , 9bila-a0a1i8cf76 , 9bila-a0a1i8d2w3 , 9bila-a0a1i8ce18 , 9bila-a0a1i8cmc7

Title : The genomes of four tapeworm species reveal adaptations to parasitism - Tsai_2013_Nature_496_57
Author(s) : Tsai IJ , Zarowiecki M , Holroyd N , Garciarrubio A , Sanchez-Flores A , Brooks KL , Tracey A , Bobes RJ , Fragoso G , Sciutto E , Aslett M , Beasley H , Bennett HM , Cai J , Camicia F , Clark R , Cucher M , De Silva N , Day TA , Deplazes P , Estrada K , Fernandez C , Holland PW , Hou J , Hu S , Huckvale T , Hung SS , Kamenetzky L , Keane JA , Kiss F , Koziol U , Lambert O , Liu K , Luo X , Luo Y , Macchiaroli N , Nichol S , Paps J , Parkinson J , Pouchkina-Stantcheva N , Riddiford N , Rosenzvit M , Salinas G , Wasmuth JD , Zamanian M , Zheng Y , Cai X , Soberon X , Olson PD , Laclette JP , Brehm K , Berriman M
Ref : Nature , 496 :57 , 2013
Abstract :
PubMedSearch : Tsai_2013_Nature_496_57
PubMedID: 23485966
Gene_locus related to this paper: echgr-k4epc5 , hymmi-a0a068x9f5 , echmu-u6hbw4 , echgr-w6ugl0 , echmu-u6hr32 , echmu-a0a068y5f4 , hymmi-a0a068xag4 , hymmi-a0a068x810 , hymmi-a0a068xcc1 , echmu-a0a068yf54 , echgr-a0a068wxj3 , echgr-a0a068wgw1 , hymmi-a0a068xge7 , hymmi-a0a068x8h9 , echmu-a0a068y747 , hymmi-a0a068xgj7 , echgr-a0a068wl60

Title : The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery - Laing_2013_Genome.Biol_14_R88
Author(s) : Laing R , Kikuchi T , Martinelli A , Tsai IJ , Beech RN , Redman E , Holroyd N , Bartley DJ , Beasley H , Britton C , Curran D , Devaney E , Gilabert A , Hunt M , Jackson F , Johnston SL , Kryukov I , Li K , Morrison AA , Reid AJ , Sargison N , Saunders GI , Wasmuth JD , Wolstenholme A , Berriman M , Gilleard JS , Cotton JA
Ref : Genome Biol , 14 :R88 , 2013
Abstract :
PubMedSearch : Laing_2013_Genome.Biol_14_R88
PubMedID: 23985316
Gene_locus related to this paper: haeco-u6nsf0 , haeco-u6psa2 , haeco-u6pu58

Title : A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni - Protasio_2012_PLoS.Negl.Trop.Dis_6_e1455
Author(s) : Protasio AV , Tsai IJ , Babbage A , Nichol S , Hunt M , Aslett MA , De Silva N , Velarde GS , Anderson TJ , Clark RC , Davidson C , Dillon GP , Holroyd NE , LoVerde PT , Lloyd C , McQuillan J , Oliveira G , Otto TD , Parker-Manuel SJ , Quail MA , Wilson RA , Zerlotini A , Dunne DW , Berriman M
Ref : PLoS Negl Trop Dis , 6 :e1455 , 2012
Abstract :
PubMedSearch : Protasio_2012_PLoS.Negl.Trop.Dis_6_e1455
PubMedID: 22253936
Gene_locus related to this paper: schma-c4qmk4 , schma-g4vhz1 , schma-g4vgd5 , schma-g4v9l4

Title : Silencing of germline-expressed genes by DNA elimination in somatic cells - Wang_2012_Dev.Cell_23_1072
Author(s) : Wang J , Mitreva M , Berriman M , Thorne A , Magrini V , Koutsovoulos G , Kumar S , Blaxter ML , Davis RE
Ref : Dev Cell , 23 :1072 , 2012
Abstract :
PubMedSearch : Wang_2012_Dev.Cell_23_1072
PubMedID: 23123092
Gene_locus related to this paper: ascsu-f1kr69 , ascsu-f1kxs8 , ascsu-f1ky57 , ascsu-f1kze8 , ascsu-f1kzv8 , ascsu-f1kzx8 , ascsu-f1l0a5 , ascsu-f1l0j3 , ascsu-f1l0s5 , ascsu-f1l1m9 , ascsu-f1l2e5 , ascsu-f1l3k2 , ascsu-f1l7s2 , ascsu-f1l145 , ascsu-u1mei8 , ascsu-u1ns34 , ascsu-u1nb30 , ascsu-f1kzg5 , ascsu-u1ntf1 , ascsu-u1nx87 , ascsu-f1l5f0 , ascsu-f1l6n2

Title : Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy - Reid_2012_PLoS.Pathog_8_e1002567
Author(s) : Reid AJ , Vermont SJ , Cotton JA , Harris D , Hill-Cawthorne GA , Konen-Waisman S , Latham SM , Mourier T , Norton R , Quail MA , Sanders M , Shanmugam D , Sohal A , Wasmuth JD , Brunk B , Grigg ME , Howard JC , Parkinson J , Roos DS , Trees AJ , Berriman M , Pain A , Wastling JM
Ref : PLoS Pathog , 8 :e1002567 , 2012
Abstract :
PubMedSearch : Reid_2012_PLoS.Pathog_8_e1002567
PubMedID: 22457617
Gene_locus related to this paper: neocl-f0v9d7 , neocl-f0v729 , neocl-f0vc02 , neocl-f0vce2 , neocl-f0vq55

Title : Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus - Kikuchi_2011_PLoS.Pathog_7_e1002219
Author(s) : Kikuchi T , Cotton JA , Dalzell JJ , Hasegawa K , Kanzaki N , McVeigh P , Takanashi T , Tsai IJ , Assefa SA , Cock PJ , Otto TD , Hunt M , Reid AJ , Sanchez-Flores A , Tsuchihara K , Yokoi T , Larsson MC , Miwa J , Maule AG , Sahashi N , Jones JT , Berriman M
Ref : PLoS Pathog , 7 :e1002219 , 2011
Abstract :
PubMedSearch : Kikuchi_2011_PLoS.Pathog_7_e1002219
PubMedID: 21909270
Gene_locus related to this paper: burxy-a0a1i7rsb1

Title : Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania - Rogers_2011_Genome.Res_21_2129
Author(s) : Rogers MB , Hilley JD , Dickens NJ , Wilkes J , Bates PA , Depledge DP , Harris D , Her Y , Herzyk P , Imamura H , Otto TD , Sanders M , Seeger K , Dujardin JC , Berriman M , Smith DF , Hertz-Fowler C , Mottram JC
Ref : Genome Res , 21 :2129 , 2011
Abstract :
PubMedSearch : Rogers_2011_Genome.Res_21_2129
PubMedID: 22038252

Title : Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis - Guida_2011_BMC.Genomics_12_628
Author(s) : Guida A , Lindstadt C , Maguire SL , Ding C , Higgins DG , Corton NJ , Berriman M , Butler G
Ref : BMC Genomics , 12 :628 , 2011
Abstract :
PubMedSearch : Guida_2011_BMC.Genomics_12_628
PubMedID: 22192698
Gene_locus related to this paper: canpc-g8bbk1

Title : An insight into the sialome of Glossina morsitans morsitans - Alves-Silva_2010_BMC.Genomics_11_213
Author(s) : Alves-Silva J , Ribeiro JM , Van Den Abbeele J , Attardo G , Hao Z , Haines LR , Soares MB , Berriman M , Aksoy S , Lehane MJ
Ref : BMC Genomics , 11 :213 , 2010
Abstract :
PubMedSearch : Alves-Silva_2010_BMC.Genomics_11_213
PubMedID: 20353571
Gene_locus related to this paper: glomm-d3tlg8 , glomm-d3tm45 , glomm-d3tmt4 , glomm-d3tn19 , glomm-d3tp96 , glomm-d3tpx7 , glomm-d3tqi3 , glomm-d3tru7 , glomm-d3ts61 , glomm-q2pz00 , glomm-d3tpl7 , glomm-d3ts28 , glomm-d3tnu0

Title : The genome sequence of Trypanosoma brucei gambiense, causative agent of chronic human african trypanosomiasis - Jackson_2010_PLoS.Negl.Trop.Dis_4_e658
Author(s) : Jackson AP , Sanders M , Berry A , McQuillan J , Aslett MA , Quail MA , Chukualim B , Capewell P , MacLeod A , Melville SE , Gibson W , Barry JD , Berriman M , Hertz-Fowler C
Ref : PLoS Negl Trop Dis , 4 :e658 , 2010
Abstract :
PubMedSearch : Jackson_2010_PLoS.Negl.Trop.Dis_4_e658
PubMedID: 20404998
Gene_locus related to this paper: tryb2-q6h9e3 , tryb2-q38cd5 , tryb2-q57u20 , tryb2-q57u43 , tryb2-q57xb0 , tryb2-q57y40 , tryb2-q389w3 , tryb2-q582c7 , tryb2-q582c8 , tryb9-c9zpb9 , tryb9-c9zu35 , tryb9-d0a9w2 , trybr-PEPTB

Title : Evolution of pathogenicity and sexual reproduction in eight Candida genomes - Butler_2009_Nature_459_657
Author(s) : Butler G , Rasmussen MD , Lin MF , Santos MA , Sakthikumar S , Munro CA , Rheinbay E , Grabherr M , Forche A , Reedy JL , Agrafioti I , Arnaud MB , Bates S , Brown AJ , Brunke S , Costanzo MC , Fitzpatrick DA , de Groot PW , Harris D , Hoyer LL , Hube B , Klis FM , Kodira C , Lennard N , Logue ME , Martin R , Neiman AM , Nikolaou E , Quail MA , Quinn J , Santos MC , Schmitzberger FF , Sherlock G , Shah P , Silverstein KA , Skrzypek MS , Soll D , Staggs R , Stansfield I , Stumpf MP , Sudbery PE , Srikantha T , Zeng Q , Berman J , Berriman M , Heitman J , Gow NA , Lorenz MC , Birren BW , Kellis M , Cuomo CA
Ref : Nature , 459 :657 , 2009
Abstract :
PubMedSearch : Butler_2009_Nature_459_657
PubMedID: 19465905
Gene_locus related to this paper: canal-ATG15 , canal-bna7 , canal-c4yl13 , canal-LIP1 , canal-LIP2 , canal-LIP3 , canal-LIP4 , canal-LIP5 , canal-LIP6 , canal-LIP7 , canal-LIP8 , canal-LIP9 , canal-LIP10 , canal-ppme1 , canal-q5a0c9 , canal-q5a2i9 , canal-q5a042 , canal-q5ad17 , canal-q5aeu3 , canal-q5afp8 , canal-q5ag57 , canal-q5ai09 , canal-q5ai12 , canal-q5ajt3 , canal-q5akz5 , canal-q5apu4 , canal-q59l46 , canal-q59m48 , canal-q59nw6 , canal-q59u61 , canal-q59u64 , canal-q59vp0 , canal-q59y97 , canaw-c4ykb1 , canaw-c4yrn6 , canaw-c4yrn9 , canaw-c4yrr3 , canaw-c4yrv3 , canaw-c4ys26 , cantt-c5m3d7 , cantt-c5m3y5 , cantt-c5m4x0 , cantt-c5m5e8 , cantt-c5m5w2 , cantt-c5m8s7 , cantt-c5m9c2 , cantt-c5m465 , cantt-c5m751 , cantt-c5m793 , cantt-c5m893 , cantt-c5ma78 , cantt-c5mag0 , cantt-c5mbb8 , cantt-c5mc53 , cantt-c5md87 , cantt-c5mdy3 , cantt-c5mey7 , cantt-c5mfg0 , cantt-c5mfh8 , cantt-c5mg56 , cantt-c5mgj0 , cantt-c5mh75 , cantt-c5mh80 , cantt-c5mh89 , cantt-c5mhh0 , cantt-c5mhn5 , cantt-c5mij5 , cantt-c5min7 , clal4-c4xvt8 , clal4-c4xwy4 , clal4-c4xy03 , clal4-c4xyx9 , clal4-c4xzz1 , clal4-c4y3e1 , clal4-c4y4f2 , clal4-c4y4w8 , clal4-c4y5j4 , clal4-c4y5j9 , clal4-c4y7z7 , clal4-c4y8q1 , clal4-c4y035 , clal4-c4y481 , clal4-c4y538 , clal4-c4y898 , clal4-c4yas2 , clal4-c4yba6 , clal4-c4yba7 , clal4-c4yc85 , lodel-a5drz3 , lodel-a5ds97 , lodel-a5dsc0 , lodel-a5duu4 , lodel-a5duy7 , lodel-a5dv03 , lodel-a5dv46 , lodel-a5dw16 , lodel-a5dwv7 , lodel-a5dww6 , lodel-a5dxf3 , lodel-a5e0z5 , lodel-a5e1c1 , lodel-a5e1l4 , lodel-a5e1p3 , lodel-a5e2s1 , lodel-a5e2t8 , lodel-a5e2v2 , lodel-a5e4u8 , lodel-a5e5a9 , lodel-a5e5k1 , lodel-a5e5z7 , lodel-a5e6w1 , lodel-a5e028 , lodel-atg15 , lodel-kex1 , picgu-a5d9u2 , picgu-a5dav0 , picgu-a5dbk0 , picgu-a5dc45 , picgu-a5dc73 , picgu-a5dc74 , picgu-a5dc75 , picgu-a5ddt8 , picgu-a5dev7 , picgu-a5dh90 , picgu-a5dhe3 , picgu-a5di38 , picgu-a5dj06 , picgu-a5dkd8 , picgu-a5dle9 , picgu-a5dlj5 , picgu-a5dm19 , picgu-a5dn92 , picgu-a5dnr3 , picgu-a5dnt6 , picgu-a5dqu5 , picgu-a5dr14 , picgu-a5drl3 , picgu-atg15 , picgu-bna7 , picgu-a5d9q3 , picgu-a5dag9 , clal4-c4y5a2 , clal4-c4y0l0 , cantt-c5mcb1 , clal4-c4y8j2 , cantt-c5m494 , clals-a0a202gac7 , canal-hda1 , picgu-a5dks8 , lodel-a5drs6 , canpc-g8bbk1 , cantt-kex1 , clal4-kex1 , picgu-kex1

Title : Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans - Jackson_2009_Genome.Res_19_2231
Author(s) : Jackson AP , Gamble JA , Yeomans T , Moran GP , Saunders D , Harris D , Aslett M , Barrell JF , Butler G , Citiulo F , Coleman DC , de Groot PW , Goodwin TJ , Quail MA , McQuillan J , Munro CA , Pain A , Poulter RT , Rajandream MA , Renauld H , Spiering MJ , Tivey A , Gow NA , Barrell B , Sullivan DJ , Berriman M
Ref : Genome Res , 19 :2231 , 2009
Abstract :
PubMedSearch : Jackson_2009_Genome.Res_19_2231
PubMedID: 19745113
Gene_locus related to this paper: canal-ATG15 , canal-c4yl13 , canal-ppme1 , canal-q5a0c9 , canal-q5ad17 , canal-q5ady2 , canal-q5ag57 , canal-q5ai12 , canal-q5akz5 , canal-q5apu4 , canal-q59m48 , canal-q59nw6 , candc-b9w8x6 , candc-b9w8x7 , candc-b9w905 , candc-b9wa64 , candc-b9wc27 , candc-b9wc30 , candc-b9wc93 , candc-b9wce3 , candc-b9wdh9 , candc-b9wds3 , candc-b9whs3 , candc-b9whs6 , candc-b9whv2 , candc-b9wi60 , candc-b9wid3 , candc-b9wje5 , candc-b9wk97 , candc-CduLAc , candc-b9wkf5 , candc-b9wkj1 , candc-b9wlf0 , candc-b9wmt8 , candc-b9wmx4 , candc-b9wc51 , candc-b9wa43 , candc-b9wl19 , candc-kex1

Title : The genome of the blood fluke Schistosoma mansoni - Berriman_2009_Nature_460_352
Author(s) : Berriman M , Haas BJ , LoVerde PT , Wilson RA , Dillon GP , Cerqueira GC , Mashiyama ST , Al-Lazikani B , Andrade LF , Ashton PD , Aslett MA , Bartholomeu DC , Blandin G , Caffrey CR , Coghlan A , Coulson R , Day TA , Delcher A , DeMarco R , Djikeng A , Eyre T , Gamble JA , Ghedin E , Gu Y , Hertz-Fowler C , Hirai H , Hirai Y , Houston R , Ivens A , Johnston DA , Lacerda D , Macedo CD , McVeigh P , Ning Z , Oliveira G , Overington JP , Parkhill J , Pertea M , Pierce RJ , Protasio AV , Quail MA , Rajandream MA , Rogers J , Sajid M , Salzberg SL , Stanke M , Tivey AR , White O , Williams DL , Wortman J , Wu W , Zamanian M , Zerlotini A , Fraser-Liggett CM , Barrell BG , El-Sayed NM
Ref : Nature , 460 :352 , 2009
Abstract :
PubMedSearch : Berriman_2009_Nature_460_352
PubMedID: 19606141
Gene_locus related to this paper: schma-ACHE1 , schma-ACHE2 , schma-c4qb79 , schma-c4qmk4 , schma-g4v9h7 , schma-BCHE , schma-g4vmf3

Title : The genome of the simian and human malaria parasite Plasmodium knowlesi - Pain_2008_Nature_455_799
Author(s) : Pain A , Bohme U , Berry AE , Mungall K , Finn RD , Jackson AP , Mourier T , Mistry J , Pasini EM , Aslett MA , Balasubrammaniam S , Borgwardt K , Brooks K , Carret C , Carver TJ , Cherevach I , Chillingworth T , Clark TG , Galinski MR , Hall N , Harper D , Harris D , Hauser H , Ivens A , Janssen CS , Keane T , Larke N , Lapp S , Marti M , Moule S , Meyer IM , Ormond D , Peters N , Sanders M , Sanders S , Sargeant TJ , Simmonds M , Smith F , Squares R , Thurston S , Tivey AR , Walker D , White B , Zuiderwijk E , Churcher C , Quail MA , Cowman AF , Turner CM , Rajandream MA , Kocken CH , Thomas AW , Newbold CI , Barrell BG , Berriman M
Ref : Nature , 455 :799 , 2008
Abstract :
PubMedSearch : Pain_2008_Nature_455_799
PubMedID: 18843368
Gene_locus related to this paper: plakh-b3kz42 , plakh-b3kz45 , plakh-b3l0y4 , plakh-b3l1r3 , plakh-b3l8u5 , plakh-b3l336 , plakh-b3l571 , plakh-b3la01 , plakh-b3lb44

Title : Comparative genomic analysis of three Leishmania species that cause diverse human disease - Peacock_2007_Nat.Genet_39_839
Author(s) : Peacock CS , Seeger K , Harris D , Murphy L , Ruiz JC , Quail MA , Peters N , Adlem E , Tivey A , Aslett M , Kerhornou A , Ivens A , Fraser A , Rajandream MA , Carver T , Norbertczak H , Chillingworth T , Hance Z , Jagels K , Moule S , Ormond D , Rutter S , Squares R , Whitehead S , Rabbinowitsch E , Arrowsmith C , White B , Thurston S , Bringaud F , Baldauf SL , Faulconbridge A , Jeffares D , Depledge DP , Oyola SO , Hilley JD , Brito LO , Tosi LR , Barrell B , Cruz AK , Mottram JC , Smith DF , Berriman M
Ref : Nat Genet , 39 :839 , 2007
Abstract :
PubMedSearch : Peacock_2007_Nat.Genet_39_839
PubMedID: 17572675
Gene_locus related to this paper: leibr-a4h6l0 , leibr-a4h6l1 , leibr-a4h9b6 , leibr-a4h908 , leibr-a4h956 , leibr-a4h959 , leibr-a4h960 , leibr-a4hen1 , leibr-a4hf07 , leibr-a4hgl0 , leibr-a4hhu6 , leibr-a4hj94 , leibr-a4hk72 , leibr-a4hpa8 , leibr-a4hpz5 , leiin-a4huz4 , leiin-a4hxe0 , leiin-a4hxh8 , leiin-a4hxi1 , leiin-a4hxn7 , leiin-a4hyv9 , leiin-a4i1v9 , leiin-a4i4z6 , leiin-a4i6n9 , leiin-a4i7q7 , leiin-a4idl6 , leima-e9ady6 , leima-OPB , leima-q4q0t5 , leima-q4q8a8 , leima-q4q398 , leima-q4q942 , leima-q4qe85 , leima-q4qe86 , leima-q4qj45

Title : Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii - Khan_2006_Genome.Res_16_1119
Author(s) : Khan A , Bohme U , Kelly KA , Adlem E , Brooks K , Simmonds M , Mungall K , Quail MA , Arrowsmith C , Chillingworth T , Churcher C , Harris D , Collins M , Fosker N , Fraser A , Hance Z , Jagels K , Moule S , Murphy L , O'Neil S , Rajandream MA , Saunders D , Seeger K , Whitehead S , Mayr T , Xuan X , Watanabe J , Suzuki Y , Wakaguri H , Sugano S , Sugimoto C , Paulsen I , Mackey AJ , Roos DS , Hall N , Berriman M , Barrell B , Sibley LD , Ajioka JW
Ref : Genome Res , 16 :1119 , 2006
Abstract :
PubMedSearch : Khan_2006_Genome.Res_16_1119
PubMedID: 16902086
Gene_locus related to this paper: toxgo-q1jt22

Title : A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses - Hall_2005_Science_307_82
Author(s) : Hall N , Karras M , Raine JD , Carlton JM , Kooij TW , Berriman M , Florens L , Janssen CS , Pain A , Christophides GK , James K , Rutherford K , Harris B , Harris D , Churcher C , Quail MA , Ormond D , Doggett J , Trueman HE , Mendoza J , Bidwell SL , Rajandream MA , Carucci DJ , Yates JR, 3rd , Kafatos FC , Janse CJ , Barrell B , Turner CM , Waters AP , Sinden RE
Ref : Science , 307 :82 , 2005
Abstract :
PubMedSearch : Hall_2005_Science_307_82
PubMedID: 15637271
Gene_locus related to this paper: plaba-q4ymx5 , plaba-q4ysr8 , plaba-q4ytp7 , plaba-q4yy11 , plaba-q4z0q9 , plaba-q4z5y0 , plaba-q4z5z8 , plaba-q4z215 , plach-q4x817 , plach-q4xb56 , plach-q4xbi1 , plach-q4xd64 , plach-q4xfc7 , plach-q4xm16 , plach-q4xmx8 , plach-q4xmy0 , plach-q4xsf9 , plach-q4xsg4 , plach-q4xsw6 , plach-q4xvc8 , plach-q4xxw0 , plach-q4xxy1 , plach-q4y0k9 , plach-q4y5u9 , plach-q4y6j0 , plach-q4y638 , plach-q4y740 , playo-PY05572 , playo-q7rq09

Title : The genome of the protist parasite Entamoeba histolytica - Loftus_2005_Nature_433_865
Author(s) : Loftus B , Anderson I , Davies R , Alsmark UC , Samuelson J , Amedeo P , Roncaglia P , Berriman M , Hirt RP , Mann BJ , Nozaki T , Suh B , Pop M , Duchene M , Ackers J , Tannich E , Leippe M , Hofer M , Bruchhaus I , Willhoeft U , Bhattacharya A , Chillingworth T , Churcher C , Hance Z , Harris B , Harris D , Jagels K , Moule S , Mungall K , Ormond D , Squares R , Whitehead S , Quail MA , Rabbinowitsch E , Norbertczak H , Price C , Wang Z , Guillen N , Gilchrist C , Stroup SE , Bhattacharya S , Lohia A , Foster PG , Sicheritz-Ponten T , Weber C , Singh U , Mukherjee C , El-Sayed NM , Petri WA, Jr. , Clark CG , Embley TM , Barrell B , Fraser CM , Hall N
Ref : Nature , 433 :865 , 2005
Abstract :
PubMedSearch : Loftus_2005_Nature_433_865
PubMedID: 15729342
Gene_locus related to this paper: entds-b0efg6 , entds-b0egj2 , enthi-b1n4x1 , enthi-b1n449 , enthi-b1n456 , enthi-c4lsp4 , enthi-c4lte6 , enthi-c4lu03 , enthi-c4lu54 , enthi-c4lve4 , enthi-c4lwe1 , enthi-c4m0c3 , enthi-c4m0e4 , enthi-c4m1e7 , enthi-c4m2a9 , enthi-c4m2i4 , enthi-c4m3r1 , enthi-c4m4l3 , enthi-c4m6g0 , enthi-c4m6k3 , enthi-c4m7k7 , enthi-c4m7n4 , enthi-c4m7v0 , enthi-c4m8y5 , enthi-c4m793 , enthi-c4mb48 , enthi-DPP , enthi-q50rh1 , enthi-q50ya6 , enthi-q51a37 , enthi-q51aw6 , enthi-q51ch3 , enthi-q51cz6 , enthi-q51ds3 , enthi-q513q8 , enthi-q513w3 , enthi-q519v1

Title : Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus - Nierman_2005_Nature_438_1151
Author(s) : Nierman WC , Pain A , Anderson MJ , Wortman JR , Kim HS , Arroyo J , Berriman M , Abe K , Archer DB , Bermejo C , Bennett J , Bowyer P , Chen D , Collins M , Coulsen R , Davies R , Dyer PS , Farman M , Fedorova N , Feldblyum TV , Fischer R , Fosker N , Fraser A , Garcia JL , Garcia MJ , Goble A , Goldman GH , Gomi K , Griffith-Jones S , Gwilliam R , Haas B , Haas H , Harris D , Horiuchi H , Huang J , Humphray S , Jimenez J , Keller N , Khouri H , Kitamoto K , Kobayashi T , Konzack S , Kulkarni R , Kumagai T , Lafon A , Latge JP , Li W , Lord A , Lu C , Majoros WH , May GS , Miller BL , Mohamoud Y , Molina M , Monod M , Mouyna I , Mulligan S , Murphy L , O'Neil S , Paulsen I , Penalva MA , Pertea M , Price C , Pritchard BL , Quail MA , Rabbinowitsch E , Rawlins N , Rajandream MA , Reichard U , Renauld H , Robson GD , Rodriguez de Cordoba S , Rodriguez-Pena JM , Ronning CM , Rutter S , Salzberg SL , Sanchez M , Sanchez-Ferrero JC , Saunders D , Seeger K , Squares R , Squares S , Takeuchi M , Tekaia F , Turner G , Vazquez de Aldana CR , Weidman J , White O , Woodward J , Yu JH , Fraser C , Galagan JE , Asai K , Machida M , Hall N , Barrell B , Denning DW
Ref : Nature , 438 :1151 , 2005
Abstract :
PubMedSearch : Nierman_2005_Nature_438_1151
PubMedID: 16372009
Gene_locus related to this paper: aspfc-b0xp50 , aspfc-b0xu40 , aspfc-b0xzj6 , aspfc-dpp5 , aspfu-apth1 , aspfu-axe1 , aspfu-CBPYA , aspfu-faec , aspfu-kex1 , aspfu-ppme1 , aspfu-q4wa39 , aspfu-q4wa78 , aspfu-q4wf56 , aspfu-q4wg73 , aspfu-q4wk44 , aspfu-q4wkh6 , aspfu-q4wnx3 , aspfu-q4wpb9 , aspfu-q4wqv2 , aspfu-q4wub2 , aspfu-q4wxr1 , aspfu-q4x0n6 , aspfu-q4x1n0 , aspfu-q5vjg7 , neofi-a1cwa6 , neofi-a1dfr9 , aspfm-a0a084bf80 , aspfu-fmac

Title : The genome of the social amoeba Dictyostelium discoideum - Eichinger_2005_Nature_435_43
Author(s) : Eichinger L , Pachebat JA , Glockner G , Rajandream MA , Sucgang R , Berriman M , Song J , Olsen R , Szafranski K , Xu Q , Tunggal B , Kummerfeld S , Madera M , Konfortov BA , Rivero F , Bankier AT , Lehmann R , Hamlin N , Davies R , Gaudet P , Fey P , Pilcher K , Chen G , Saunders D , Sodergren E , Davis P , Kerhornou A , Nie X , Hall N , Anjard C , Hemphill L , Bason N , Farbrother P , Desany B , Just E , Morio T , Rost R , Churcher C , Cooper J , Haydock S , van Driessche N , Cronin A , Goodhead I , Muzny D , Mourier T , Pain A , Lu M , Harper D , Lindsay R , Hauser H , James K , Quiles M , Madan Babu M , Saito T , Buchrieser C , Wardroper A , Felder M , Thangavelu M , Johnson D , Knights A , Loulseged H , Mungall K , Oliver K , Price C , Quail MA , Urushihara H , Hernandez J , Rabbinowitsch E , Steffen D , Sanders M , Ma J , Kohara Y , Sharp S , Simmonds M , Spiegler S , Tivey A , Sugano S , White B , Walker D , Woodward J , Winckler T , Tanaka Y , Shaulsky G , Schleicher M , Weinstock G , Rosenthal A , Cox EC , Chisholm RL , Gibbs R , Loomis WF , Platzer M , Kay RR , Williams J , Dear PH , Noegel AA , Barrell B , Kuspa A
Ref : Nature , 435 :43 , 2005
Abstract :
PubMedSearch : Eichinger_2005_Nature_435_43
PubMedID: 15875012
Gene_locus related to this paper: dicdi-abhd , dicdi-ACHE , dicdi-apra , dicdi-cinbp , dicdi-CMBL , dicdi-crysp , dicdi-DPOA , dicdi-P90528 , dicdi-ppme1 , dicdi-Q8MYE7 , dicdi-q54cf7 , dicdi-q54cl7 , dicdi-q54cm0 , dicdi-q54ct5 , dicdi-q54cu1 , dicdi-q54d54 , dicdi-q54d66 , dicdi-q54dj5 , dicdi-q54dy7 , dicdi-q54ek1 , dicdi-q54eq6 , dicdi-q54et1 , dicdi-q54et7 , dicdi-q54f01 , dicdi-q54g24 , dicdi-q54g47 , dicdi-q54gi7 , dicdi-q54gw5 , dicdi-q54gx3 , dicdi-q54h23 , dicdi-q54h73 , dicdi-q54i38 , dicdi-q54ie5 , dicdi-q54in4 , dicdi-q54kz1 , dicdi-q54l36 , dicdi-q54li1 , dicdi-q54m29 , dicdi-q54n21 , dicdi-q54n35 , dicdi-q54n85 , dicdi-q54qe7 , dicdi-q54qi3 , dicdi-q54qk2 , dicdi-q54rl3 , dicdi-q54rl8 , dicdi-q54sy6 , dicdi-q54sz3 , dicdi-q54t49 , dicdi-q54t91 , dicdi-q54th2 , dicdi-q54u01 , dicdi-q54vc2 , dicdi-q54vw1 , dicdi-q54xe3 , dicdi-q54xl3 , dicdi-q54xu1 , dicdi-q54xu2 , dicdi-q54y48 , dicdi-q54yd0 , dicdi-q54ye0 , dicdi-q54yl1 , dicdi-q54yr8 , dicdi-q54z90 , dicdi-q55bx3 , dicdi-q55d01 , dicdi-q55d81 , dicdi-q55du6 , dicdi-q55eu1 , dicdi-q55eu8 , dicdi-q55fk4 , dicdi-q55gk7 , dicdi-Q54ZA6 , dicdi-q86h82 , dicdi-Q86HC9 , dicdi-Q86HM5 , dicdi-Q86HM6 , dicdi-q86iz7 , dicdi-q86jb6 , dicdi-Q86KU7 , dicdi-q550s3 , dicdi-q552c0 , dicdi-q553t5 , dicdi-q555e5 , dicdi-q555h0 , dicdi-q555h1 , dicdi-q557k5 , dicdi-q558u2 , dicdi-Q869Q8 , dicdi-u554 , dicdi-y9086 , dicdi-q54r44 , dicdi-f172a

Title : Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes - Gardner_2005_Science_309_134
Author(s) : Gardner MJ , Bishop R , Shah T , de Villiers EP , Carlton JM , Hall N , Ren Q , Paulsen IT , Pain A , Berriman M , Wilson RJ , Sato S , Ralph SA , Mann DJ , Xiong Z , Shallom SJ , Weidman J , Jiang L , Lynn J , Weaver B , Shoaibi A , Domingo AR , Wasawo D , Crabtree J , Wortman JR , Haas B , Angiuoli SV , Creasy TH , Lu C , Suh B , Silva JC , Utterback TR , Feldblyum TV , Pertea M , Allen J , Nierman WC , Taracha EL , Salzberg SL , White OR , Fitzhugh HA , Morzaria S , Venter JC , Fraser CM , Nene V
Ref : Science , 309 :134 , 2005
Abstract :
PubMedSearch : Gardner_2005_Science_309_134
PubMedID: 15994558
Gene_locus related to this paper: thepa-q4mzr2 , thepa-q4n0b4 , thepa-q4n2i4 , thepa-q4n4i8 , thepa-q4n5d6 , thepa-q4n5m4 , thepa-q4n006 , thepa-q4n9g7 , thepa-q4n315 , thepa-q4n349 , thepa-q4n803

Title : The genome of the kinetoplastid parasite, Leishmania major - Ivens_2005_Science_309_436
Author(s) : Ivens AC , Peacock CS , Worthey EA , Murphy L , Aggarwal G , Berriman M , Sisk E , Rajandream MA , Adlem E , Aert R , Anupama A , Apostolou Z , Attipoe P , Bason N , Bauser C , Beck A , Beverley SM , Bianchettin G , Borzym K , Bothe G , Bruschi CV , Collins M , Cadag E , Ciarloni L , Clayton C , Coulson RM , Cronin A , Cruz AK , Davies RM , De Gaudenzi J , Dobson DE , Duesterhoeft A , Fazelina G , Fosker N , Frasch AC , Fraser A , Fuchs M , Gabel C , Goble A , Goffeau A , Harris D , Hertz-Fowler C , Hilbert H , Horn D , Huang Y , Klages S , Knights A , Kube M , Larke N , Litvin L , Lord A , Louie T , Marra M , Masuy D , Matthews K , Michaeli S , Mottram JC , Muller-Auer S , Munden H , Nelson S , Norbertczak H , Oliver K , O'Neil S , Pentony M , Pohl TM , Price C , Purnelle B , Quail MA , Rabbinowitsch E , Reinhardt R , Rieger M , Rinta J , Robben J , Robertson L , Ruiz JC , Rutter S , Saunders D , Schafer M , Schein J , Schwartz DC , Seeger K , Seyler A , Sharp S , Shin H , Sivam D , Squares R , Squares S , Tosato V , Vogt C , Volckaert G , Wambutt R , Warren T , Wedler H , Woodward J , Zhou S , Zimmermann W , Smith DF , Blackwell JM , Stuart KD , Barrell B , Myler PJ
Ref : Science , 309 :436 , 2005
Abstract :
PubMedSearch : Ivens_2005_Science_309_436
PubMedID: 16020728
Gene_locus related to this paper: leima-e9ady6 , leima-L2464.12 , leima-L2802.02 , leima-OPB , leima-q4fw33 , leima-q4fwg8 , leima-q4fwj0 , leima-q4fya7 , leima-q4q0a1 , leima-q4q0t5 , leima-q4q0v0 , leima-q4q1h9 , leima-q4q2c9 , leima-q4q4j7 , leima-q4q4t6 , leima-q4q5j1 , leima-q4q6e9 , leima-q4q7v8 , leima-q4q8a8 , leima-q4q9g9 , leima-q4q080 , leima-q4q398 , leima-q4q615 , leima-q4q819 , leima-q4q871 , leima-q4q942 , leima-q4qae7 , leima-q4qb85 , leima-q4qdz7 , leima-q4qe26 , leima-q4qe31 , leima-q4qe85 , leima-q4qe86 , leima-q4qe87 , leima-q4qe90 , leima-q4qec8 , leima-q4qgz4 , leima-q4qgz5 , leima-q4qhs0 , leima-q4qj45

Title : Genome of the host-cell transforming parasite Theileria annulata compared with T. parva - Pain_2005_Science_309_131
Author(s) : Pain A , Renauld H , Berriman M , Murphy L , Yeats CA , Weir W , Kerhornou A , Aslett M , Bishop R , Bouchier C , Cochet M , Coulson RM , Cronin A , de Villiers EP , Fraser A , Fosker N , Gardner M , Goble A , Griffiths-Jones S , Harris DE , Katzer F , Larke N , Lord A , Maser P , McKellar S , Mooney P , Morton F , Nene V , O'Neil S , Price C , Quail MA , Rabbinowitsch E , Rawlings ND , Rutter S , Saunders D , Seeger K , Shah T , Squares R , Squares S , Tivey A , Walker AR , Woodward J , Dobbelaere DA , Langsley G , Rajandream MA , McKeever D , Shiels B , Tait A , Barrell B , Hall N
Ref : Science , 309 :131 , 2005
Abstract :
PubMedSearch : Pain_2005_Science_309_131
PubMedID: 15994557
Gene_locus related to this paper: thean-q4u9u6 , thean-q4ub48 , thean-q4ubz1 , thean-q4uc78 , thean-q4uc93 , thean-q4uck1 , thean-q4udw9 , thean-q4ue56 , thean-q4uf06 , thean-q4ug98 , thean-q4uhj9 , thepa-q4n349

Title : The genome of the African trypanosome Trypanosoma brucei - Berriman_2005_Science_309_416
Author(s) : Berriman M , Ghedin E , Hertz-Fowler C , Blandin G , Renauld H , Bartholomeu DC , Lennard NJ , Caler E , Hamlin NE , Haas B , Bohme U , Hannick L , Aslett MA , Shallom J , Marcello L , Hou L , Wickstead B , Alsmark UC , Arrowsmith C , Atkin RJ , Barron AJ , Bringaud F , Brooks K , Carrington M , Cherevach I , Chillingworth TJ , Churcher C , Clark LN , Corton CH , Cronin A , Davies RM , Doggett J , Djikeng A , Feldblyum T , Field MC , Fraser A , Goodhead I , Hance Z , Harper D , Harris BR , Hauser H , Hostetler J , Ivens A , Jagels K , Johnson D , Johnson J , Jones K , Kerhornou AX , Koo H , Larke N , Landfear S , Larkin C , Leech V , Line A , Lord A , MacLeod A , Mooney PJ , Moule S , Martin DM , Morgan GW , Mungall K , Norbertczak H , Ormond D , Pai G , Peacock CS , Peterson J , Quail MA , Rabbinowitsch E , Rajandream MA , Reitter C , Salzberg SL , Sanders M , Schobel S , Sharp S , Simmonds M , Simpson AJ , Tallon L , Turner CM , Tait A , Tivey AR , Van Aken S , Walker D , Wanless D , Wang S , White B , White O , Whitehead S , Woodward J , Wortman J , Adams MD , Embley TM , Gull K , Ullu E , Barry JD , Fairlamb AH , Opperdoes F , Barrell BG , Donelson JE , Hall N , Fraser CM , Melville SE , El-Sayed NM
Ref : Science , 309 :416 , 2005
Abstract :
PubMedSearch : Berriman_2005_Science_309_416
PubMedID: 16020726
Gene_locus related to this paper: tryb2-q6h9e3 , tryb2-q6ha27 , tryb2-q38cd5 , tryb2-q38cd6 , tryb2-q38cd7 , tryb2-q38dc1 , tryb2-q38de4 , tryb2-q38ds6 , tryb2-q38dx1 , tryb2-q380z6 , tryb2-q382c1 , tryb2-q382l4 , tryb2-q383a9 , tryb2-q386e3 , tryb2-q387r7 , tryb2-q388n1 , tryb2-q389w3 , trybr-PEPTB , trycr-q4cq28 , trycr-q4cq94 , trycr-q4cq95 , trycr-q4cq96 , trycr-q4csm0 , trycr-q4cwv3 , trycr-q4cx66 , trycr-q4cxr6 , trycr-q4cyc5 , trycr-q4cyf6 , trycr-q4d3a2 , trycr-q4d3x3 , trycr-q4d3y4 , trycr-q4d6h1 , trycr-q4d8h8 , trycr-q4d8h9 , trycr-q4d8i0 , trycr-q4d786 , trycr-q4d975 , trycr-q4da08 , trycr-q4dap6 , trycr-q4dbm2 , trycr-q4dbn1 , trycr-q4ddw7 , trycr-q4de42 , trycr-q4dhn8 , trycr-q4dkk8 , trycr-q4dkk9 , trycr-q4dm56 , trycr-q4dqa6 , trycr-q4dt91 , trycr-q4dvp2 , trycr-q4dw34 , trycr-q4dwm3 , trycr-q4dy49 , trycr-q4dy82 , trycr-q4dzp6 , trycr-q4e3m8 , trycr-q4e4t5 , trycr-q4e5d1 , trycr-q4e5z2

Title : Comparative genomics of trypanosomatid parasitic protozoa - El-Sayed_2005_Science_309_404
Author(s) : El-Sayed NM , Myler PJ , Blandin G , Berriman M , Crabtree J , Aggarwal G , Caler E , Renauld H , Worthey EA , Hertz-Fowler C , Ghedin E , Peacock C , Bartholomeu DC , Haas BJ , Tran AN , Wortman JR , Alsmark UC , Angiuoli S , Anupama A , Badger J , Bringaud F , Cadag E , Carlton JM , Cerqueira GC , Creasy T , Delcher AL , Djikeng A , Embley TM , Hauser C , Ivens AC , Kummerfeld SK , Pereira-Leal JB , Nilsson D , Peterson J , Salzberg SL , Shallom J , Silva JC , Sundaram J , Westenberger S , White O , Melville SE , Donelson JE , Andersson B , Stuart KD , Hall N
Ref : Science , 309 :404 , 2005
Abstract :
PubMedSearch : El-Sayed_2005_Science_309_404
PubMedID: 16020724
Gene_locus related to this paper: tryb2-q382c1 , trycr-q4dhv2 , trycr-q4dpt2 , trycr-q4dpy4

Title : The DNA sequence of chromosome I of an African trypanosome: gene content, chromosome organisation, recombination and polymorphism - Hall_2003_Nucleic.Acids.Res_31_4864
Author(s) : Hall N , Berriman M , Lennard NJ , Harris BR , Hertz-Fowler C , Bart-Delabesse EN , Gerrard CS , Atkin RJ , Barron AJ , Bowman S , Bray-Allen SP , Bringaud F , Clark LN , Corton CH , Cronin A , Davies R , Doggett J , Fraser A , Gruter E , Hall S , Harper AD , Kay MP , Leech V , Mayes R , Price C , Quail MA , Rabbinowitsch E , Reitter C , Rutherford K , Sasse J , Sharp S , Shownkeen R , MacLeod A , Taylor S , Tweedie A , Turner CM , Tait A , Gull K , Barrell B , Melville SE
Ref : Nucleic Acids Research , 31 :4864 , 2003
Abstract :
PubMedSearch : Hall_2003_Nucleic.Acids.Res_31_4864
PubMedID: 12907729
Gene_locus related to this paper: trybr-CHR1.244 , trybr-CHR1.412 , trybr-Q4GYA0

Title : Genome sequence of the human malaria parasite Plasmodium falciparum - Gardner_2002_Nature_419_498
Author(s) : Gardner MJ , Hall N , Fung E , White O , Berriman M , Hyman RW , Carlton JM , Pain A , Nelson KE , Bowman S , Paulsen IT , James K , Eisen JA , Rutherford K , Salzberg SL , Craig A , Kyes S , Chan MS , Nene V , Shallom SJ , Suh B , Peterson J , Angiuoli S , Pertea M , Allen J , Selengut J , Haft D , Mather MW , Vaidya AB , Martin DM , Fairlamb AH , Fraunholz MJ , Roos DS , Ralph SA , McFadden GI , Cummings LM , Subramanian GM , Mungall C , Venter JC , Carucci DJ , Hoffman SL , Newbold C , Davis RW , Fraser CM , Barrell B
Ref : Nature , 419 :498 , 2002
Abstract :
PubMedSearch : Gardner_2002_Nature_419_498
PubMedID: 12368864
Gene_locus related to this paper: plaf7-c0h4q4 , plaf7-q8i5y6 , plaf7-q8iik5 , plafa-PF10.0018 , plafa-PF10.0020 , plafa-PF10.0379 , plafa-PF11.0211 , plafa-PF11.0276 , plafa-PF11.0441 , plafa-PF14.0015 , plafa-PF14.0017 , plafa-PF14.0099 , plafa-PF14.0250 , plafa-PF14.0395 , plafa-PF14.0737 , plafa-PF14.0738 , plafa-PFL2530W

Title : Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13 - Hall_2002_Nature_419_527
Author(s) : Hall N , Pain A , Berriman M , Churcher C , Harris B , Harris D , Mungall K , Bowman S , Atkin R , Baker S , Barron A , Brooks K , Buckee CO , Burrows C , Cherevach I , Chillingworth C , Chillingworth T , Christodoulou Z , Clark L , Clark R , Corton C , Cronin A , Davies R , Davis P , Dear P , Dearden F , Doggett J , Feltwell T , Goble A , Goodhead I , Gwilliam R , Hamlin N , Hance Z , Harper D , Hauser H , Hornsby T , Holroyd S , Horrocks P , Humphray S , Jagels K , James KD , Johnson D , Kerhornou A , Knights A , Konfortov B , Kyes S , Larke N , Lawson D , Lennard N , Line A , Maddison M , McLean J , Mooney P , Moule S , Murphy L , Oliver K , Ormond D , Price C , Quail MA , Rabbinowitsch E , Rajandream MA , Rutter S , Rutherford KM , Sanders M , Simmonds M , Seeger K , Sharp S , Smith R , Squares R , Squares S , Stevens K , Taylor K , Tivey A , Unwin L , Whitehead S , Woodward J , Sulston JE , Craig A , Newbold C , Barrell BG
Ref : Nature , 419 :527 , 2002
Abstract :
PubMedSearch : Hall_2002_Nature_419_527
PubMedID: 12368867
Gene_locus related to this paper: plaf7-c0h4q4 , plafa-MAL6P1.135 , plafa-PFD0185C , plafa-PFI1775W , plafa-PFI1800W