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Title : Draft Genome Sequence of Enterococcus faecalis PC1.1, a Candidate Probiotic Strain Isolated from Human Feces - O Cuv_2013_Genome.Announc_1_e00160 |
Author(s) : O Cuv P , Klaassens ES , Smith WJ , Mondot S , Durkin AS , Harkins DM , Foster L , McCorrison J , Torralba M , Nelson KE , Morrison M |
Ref : Genome Announc , 1 : e00160 , 2013 |
Abstract : O Cuv_2013_Genome.Announc_1_e00160 |
ESTHER : O Cuv_2013_Genome.Announc_1_e00160 |
PubMedSearch : O Cuv_2013_Genome.Announc_1_e00160 |
PubMedID: 23469340 |
Gene_locus related to this paper: entfl-e2z7d4 |
Title : Draft Genome Sequences of Two Pairs of Human Intestinal Bifidobacterium longum subsp. longum Strains, 44B and 1-6B and 35B and 2-2B, Consecutively Isolated from Two Children after a 5-Year Time Period - Shkoporov_2013_Genome.Announc_1_e00234 |
Author(s) : Shkoporov AN , Efimov BA , Khokhlova EV , Chaplin AV , Kafarskaya LI , Durkin AS , McCorrison J , Torralba M , Gillis M , Sutton G , Weibel DB , Nelson KE , Smeianov VV |
Ref : Genome Announc , 1 :e00234 , 2013 |
Abstract : Shkoporov_2013_Genome.Announc_1_e00234 |
ESTHER : Shkoporov_2013_Genome.Announc_1_e00234 |
PubMedSearch : Shkoporov_2013_Genome.Announc_1_e00234 |
PubMedID: 23682142 |
Gene_locus related to this paper: bifln-c2gtr2 |
Title : Draft genome sequence of Turicibacter sanguinis PC909, isolated from human feces - Cuiv_2011_J.Bacteriol_193_1288 |
Author(s) : Cuiv PO , Klaassens ES , Durkin AS , Harkins DM , Foster L , McCorrison J , Torralba M , Nelson KE , Morrison M |
Ref : Journal of Bacteriology , 193 :1288 , 2011 |
Abstract : Cuiv_2011_J.Bacteriol_193_1288 |
ESTHER : Cuiv_2011_J.Bacteriol_193_1288 |
PubMedSearch : Cuiv_2011_J.Bacteriol_193_1288 |
PubMedID: 21183674 |
Gene_locus related to this paper: 9firm-d4w7y6 , 9firm-d4w7y7 , 9firm-f0hgc7 , 9firm-d4w6y8 , 9firm-d4w5a4 |
Title : Draft genome sequence of Bacteroides vulgatus PC510, a strain isolated from human feces - Cuiv_2011_J.Bacteriol_193_4025 |
Author(s) : Cuiv PO , Klaassens ES , Durkin AS , Harkins DM , Foster L , McCorrison J , Torralba M , Nelson KE , Morrison M |
Ref : Journal of Bacteriology , 193 :4025 , 2011 |
Abstract : Cuiv_2011_J.Bacteriol_193_4025 |
ESTHER : Cuiv_2011_J.Bacteriol_193_4025 |
PubMedSearch : Cuiv_2011_J.Bacteriol_193_4025 |
PubMedID: 21622758 |
Gene_locus related to this paper: 9bace-b6w170 , bacv8-a6kwf6 , bacv8-a6kzc1 , bacv8-a6kze8 , bacv8-a6l1d0 , bacv8-a6l1u9 , bacv8-a6l018 , bacv8-a6l715 , bacvu-d4vbw6 |
Title : Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche - Purushe_2010_Microb.Ecol_60_721 |
Author(s) : Purushe J , Fouts DE , Morrison M , White BA , Mackie RI , Coutinho PM , Henrissat B , Nelson KE |
Ref : Microb Ecol , 60 :721 , 2010 |
Abstract : Purushe_2010_Microb.Ecol_60_721 |
ESTHER : Purushe_2010_Microb.Ecol_60_721 |
PubMedSearch : Purushe_2010_Microb.Ecol_60_721 |
PubMedID: 20585943 |
Gene_locus related to this paper: prebr-d8dt96 , prebr-d8du06 , prebr-d8dv28 , prebr-d8dwg8 , prebr-d8dy06 , prer2-d5esm6 , prebr-d8dul5 , prebr-d8dxa2 , prebr-d8dw03 , prer2-d5erq4 , prer2-d5ewz1 , prebr-d8dv01 , prer2-axea1 , prer2-axfa |
Title : Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential - Yeoman_2010_PLoS.One_5_e12411 |
Author(s) : Yeoman CJ , Yildirim S , Thomas SM , Durkin AS , Torralba M , Sutton G , Buhay CJ , Ding Y , Dugan-Rocha SP , Muzny DM , Qin X , Gibbs RA , Leigh SR , Stumpf R , White BA , Highlander SK , Nelson KE , Wilson BA |
Ref : PLoS ONE , 5 :e12411 , 2010 |
Abstract : Yeoman_2010_PLoS.One_5_e12411 |
ESTHER : Yeoman_2010_PLoS.One_5_e12411 |
PubMedSearch : Yeoman_2010_PLoS.One_5_e12411 |
PubMedID: 20865041 |
Gene_locus related to this paper: garv4-d2rbq6 , garv4-d2rap1 , garv3-e3d9p1 |
Title : Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus - DeBoy_2008_J.Bacteriol_190_5455 |
Author(s) : DeBoy RT , Mongodin EF , Fouts DE , Tailford LE , Khouri H , Emerson JB , Mohamoud Y , Watkins K , Henrissat B , Gilbert HJ , Nelson KE |
Ref : Journal of Bacteriology , 190 :5455 , 2008 |
Abstract : DeBoy_2008_J.Bacteriol_190_5455 |
ESTHER : DeBoy_2008_J.Bacteriol_190_5455 |
PubMedSearch : DeBoy_2008_J.Bacteriol_190_5455 |
PubMedID: 18556790 |
Gene_locus related to this paper: celju-b3pei5 , celju-b3pf25 , celju-b3pfb5 , celju-b3pgh5 , celju-b3pgz5 , celju-b3ph03 , celju-b3pi00 , celju-b3pi89 , celju-b3pj26 , celju-b3pju5 , celju-b3pks4 , celju-b3pks5 , celju-b3plp7 , celju-metx , celju-b3phr4 , celju-b3pjj6 , celju-b3pcj5 , celju-b3pcu6 , celju-b3pei0 |
Title : Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes - Seshadri_2005_Science_307_105 |
Author(s) : Seshadri R , Adrian L , Fouts DE , Eisen JA , Phillippy AM , Methe BA , Ward NL , Nelson WC , DeBoy RT , Khouri HM , Kolonay JF , Dodson RJ , Daugherty SC , Brinkac LM , Sullivan SA , Madupu R , Nelson KE , Kang KH , Impraim M , Tran K , Robinson JM , Forberger HA , Fraser CM , Zinder SH , Heidelberg JF |
Ref : Science , 307 :105 , 2005 |
Abstract : Seshadri_2005_Science_307_105 |
ESTHER : Seshadri_2005_Science_307_105 |
PubMedSearch : Seshadri_2005_Science_307_105 |
PubMedID: 15637277 |
Gene_locus related to this paper: dehm1-q3z6q3 , dehm1-q3z6x9 , dehm1-q3z6z2 , dehm1-q3z8f3 , dehm1-q3za50 |
Title : Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species - Fouts_2005_PLoS.Biol_3_e15 |
Author(s) : Fouts DE , Mongodin EF , Mandrell RE , Miller WG , Rasko DA , Ravel J , Brinkac LM , DeBoy RT , Parker CT , Daugherty SC , Dodson RJ , Durkin AS , Madupu R , Sullivan SA , Shetty JU , Ayodeji MA , Shvartsbeyn A , Schatz MC , Badger JH , Fraser CM , Nelson KE |
Ref : PLoS Biol , 3 :e15 , 2005 |
Abstract : Fouts_2005_PLoS.Biol_3_e15 |
ESTHER : Fouts_2005_PLoS.Biol_3_e15 |
PubMedSearch : Fouts_2005_PLoS.Biol_3_e15 |
PubMedID: 15660156 |
Gene_locus related to this paper: camje-CJ0796C , camjr-q5ht69 , camjr-q5ht95 , camjr-q5huc7 , camjr-q5hwg6 , camju-a3yll6 |
Title : Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath) - Ward_2004_PLoS.Biol_2_e303 |
Author(s) : Ward N , Larsen O , Sakwa J , Bruseth L , Khouri H , Durkin AS , Dimitrov G , Jiang L , Scanlan D , Kang KH , Lewis M , Nelson KE , Methe B , Wu M , Heidelberg JF , Paulsen IT , Fouts D , Ravel J , Tettelin H , Ren Q , Read T , DeBoy RT , Seshadri R , Salzberg SL , Jensen HB , Birkeland NK , Nelson WC , Dodson RJ , Grindhaug SH , Holt I , Eidhammer I , Jonasen I , Vanaken S , Utterback T , Feldblyum TV , Fraser CM , Lillehaug JR , Eisen JA |
Ref : PLoS Biol , 2 :e303 , 2004 |
Abstract : Ward_2004_PLoS.Biol_2_e303 |
ESTHER : Ward_2004_PLoS.Biol_2_e303 |
PubMedSearch : Ward_2004_PLoS.Biol_2_e303 |
PubMedID: 15383840 |
Gene_locus related to this paper: metca-q60a38 , metca-q60bu6 , metca-q60cn0 , metca-q605j8 , metca-q606x9 , metca-q607f7 , metca-q607m2 , metca-q609v0 |
Title : Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements - Wu_2004_PLoS.Biol_2_E69 |
Author(s) : Wu M , Sun LV , Vamathevan J , Riegler M , Deboy R , Brownlie JC , McGraw EA , Martin W , Esser C , Ahmadinejad N , Wiegand C , Madupu R , Beanan MJ , Brinkac LM , Daugherty SC , Durkin AS , Kolonay JF , Nelson WC , Mohamoud Y , Lee P , Berry K , Young MB , Utterback T , Weidman J , Nierman WC , Paulsen IT , Nelson KE , Tettelin H , O'Neill SL , Eisen JA |
Ref : PLoS Biol , 2 :E69 , 2004 |
Abstract : Wu_2004_PLoS.Biol_2_E69 |
ESTHER : Wu_2004_PLoS.Biol_2_E69 |
PubMedSearch : Wu_2004_PLoS.Biol_2_E69 |
PubMedID: 15024419 |
Gene_locus related to this paper: wolpm-q73gf0 , wolpm-q73gx7 |
Title : Genome of Geobacter sulfurreducens: metal reduction in subsurface environments - Methe_2003_Science_302_1967 |
Author(s) : Methe BA , Nelson KE , Eisen JA , Paulsen IT , Nelson W , Heidelberg JF , Wu D , Wu M , Ward N , Beanan MJ , Dodson RJ , Madupu R , Brinkac LM , Daugherty SC , DeBoy RT , Durkin AS , Gwinn M , Kolonay JF , Sullivan SA , Haft DH , Selengut J , Davidsen TM , Zafar N , White O , Tran B , Romero C , Forberger HA , Weidman J , Khouri H , Feldblyum TV , Utterback TR , Van Aken SE , Lovley DR , Fraser CM |
Ref : Science , 302 :1967 , 2003 |
Abstract : Methe_2003_Science_302_1967 |
ESTHER : Methe_2003_Science_302_1967 |
PubMedSearch : Methe_2003_Science_302_1967 |
PubMedID: 14671304 |
Gene_locus related to this paper: geosl-q74a54 , geosl-q74ac8 , geosl-q74eb1 , geosl-q747u4 , geosl-q747v8 , geosl-q749w4 |
Title : Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83 - Nelson_2003_J.Bacteriol_185_5591 |
Author(s) : Nelson KE , Fleischmann RD , DeBoy RT , Paulsen IT , Fouts DE , Eisen JA , Daugherty SC , Dodson RJ , Durkin AS , Gwinn M , Haft DH , Kolonay JF , Nelson WC , Mason T , Tallon L , Gray J , Granger D , Tettelin H , Dong H , Galvin JL , Duncan MJ , Dewhirst FE , Fraser CM |
Ref : Journal of Bacteriology , 185 :5591 , 2003 |
Abstract : Nelson_2003_J.Bacteriol_185_5591 |
ESTHER : Nelson_2003_J.Bacteriol_185_5591 |
PubMedSearch : Nelson_2003_J.Bacteriol_185_5591 |
PubMedID: 12949112 |
Gene_locus related to this paper: 9gamm-q4a538 , porgi-DPP , porgi-q7mtk3 , porgi-q7mu18 , porgi-q7mub3 , porgi-q7muw6 , porgi-q7mvp4 , porgi-q7mwa7 , porgi-q7mx03 |
Title : Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis - Paulsen_2003_Science_299_2071 |
Author(s) : Paulsen IT , Banerjei L , Myers GS , Nelson KE , Seshadri R , Read TD , Fouts DE , Eisen JA , Gill SR , Heidelberg JF , Tettelin H , Dodson RJ , Umayam L , Brinkac L , Beanan M , Daugherty S , DeBoy RT , Durkin S , Kolonay J , Madupu R , Nelson W , Vamathevan J , Tran B , Upton J , Hansen T , Shetty J , Khouri H , Utterback T , Radune D , Ketchum KA , Dougherty BA , Fraser CM |
Ref : Science , 299 :2071 , 2003 |
Abstract : Paulsen_2003_Science_299_2071 |
ESTHER : Paulsen_2003_Science_299_2071 |
PubMedSearch : Paulsen_2003_Science_299_2071 |
PubMedID: 12663927 |
Gene_locus related to this paper: entfa-EF0101 , entfa-EF0274 , entfa-EF0381 , entfa-EF0449 , entfa-EF0667 , entfa-EF0786 , entfa-EF1028 , entfa-EF1236 , entfa-EF1505 , entfa-EF1536 , entfa-EF1670 , entfa-EF2618 , entfa-EF2728 , entfa-EF2792 , entfa-EF2963 , entfa-EF3191 |
Title : Complete genome sequence of the Q-fever pathogen Coxiella burnetii - Seshadri_2003_Proc.Natl.Acad.Sci.U.S.A_100_5455 |
Author(s) : Seshadri R , Paulsen IT , Eisen JA , Read TD , Nelson KE , Nelson WC , Ward NL , Tettelin H , Davidsen TM , Beanan MJ , DeBoy RT , Daugherty SC , Brinkac LM , Madupu R , Dodson RJ , Khouri HM , Lee KH , Carty HA , Scanlan D , Heinzen RA , Thompson HA , Samuel JE , Fraser CM , Heidelberg JF |
Ref : Proc Natl Acad Sci U S A , 100 :5455 , 2003 |
Abstract : Seshadri_2003_Proc.Natl.Acad.Sci.U.S.A_100_5455 |
ESTHER : Seshadri_2003_Proc.Natl.Acad.Sci.U.S.A_100_5455 |
PubMedSearch : Seshadri_2003_Proc.Natl.Acad.Sci.U.S.A_100_5455 |
PubMedID: 12704232 |
Gene_locus related to this paper: coxbu-BIOH , coxbu-CBU0752 , coxbu-CBU1119 , coxbu-CBU1225 , coxbu-CBU1529 , coxbu-CBU1769 , coxbu-CBU1975 |
Title : Complete genome sequence of a virulent isolate of Streptococcus pneumoniae - Tettelin_2001_Science_293_498 |
Author(s) : Tettelin H , Nelson KE , Paulsen IT , Eisen JA , Read TD , Peterson S , Heidelberg J , DeBoy RT , Haft DH , Dodson RJ , Durkin AS , Gwinn M , Kolonay JF , Nelson WC , Peterson JD , Umayam LA , White O , Salzberg SL , Lewis MR , Radune D , Holtzapple E , Khouri H , Wolf AM , Utterback TR , Hansen CL , McDonald LA , Feldblyum TV , Angiuoli S , Dickinson T , Hickey EK , Holt IE , Loftus BJ , Yang F , Smith HO , Venter JC , Dougherty BA , Morrison DA , Hollingshead SK , Fraser CM |
Ref : Science , 293 :498 , 2001 |
Abstract : Tettelin_2001_Science_293_498 |
ESTHER : Tettelin_2001_Science_293_498 |
PubMedSearch : Tettelin_2001_Science_293_498 |
PubMedID: 11463916 |
Gene_locus related to this paper: strp2-q04l35 , strpj-b8zns7 , strpn-AXE1 , strpn-b2dz20 , strpn-pepx , strpn-SP0614 , strpn-SP0666 , strpn-SP0777 , strpn-SP0902 , strpn-SP1343 |
Title : Complete genome sequence of Neisseria meningitidis serogroup B strain MC58 - Tettelin_2000_Science_287_1809 |
Author(s) : Tettelin H , Saunders NJ , Heidelberg J , Jeffries AC , Nelson KE , Eisen JA , Ketchum KA , Hood DW , Peden JF , Dodson RJ , Nelson WC , Gwinn ML , Deboy R , Peterson JD , Hickey EK , Haft DH , Salzberg SL , White O , Fleischmann RD , Dougherty BA , Mason T , Ciecko A , Parksey DS , Blair E , Cittone H , Clark EB , Cotton MD , Utterback TR , Khouri H , Qin H , Vamathevan J , Gill J , Scarlato V , Masignani V , Pizza M , Grandi G , Sun L , Smith HO , Fraser CM , Moxon ER , Rappuoli R , Venter JC |
Ref : Science , 287 :1809 , 2000 |
Abstract : Tettelin_2000_Science_287_1809 |
ESTHER : Tettelin_2000_Science_287_1809 |
PubMedSearch : Tettelin_2000_Science_287_1809 |
PubMedID: 10710307 |
Gene_locus related to this paper: neigo-pip , neima-metx , neimb-q9k0t9 , neime-ESD , neime-NMA2216 , neime-NMB0276 , neime-NMB0868 , neime-NMB1828 , neime-NMB1877 |
Title : Intrathecal neostigmine and sufentanil for early labor analgesia - Nelson_1999_Anesthesiology_91_1293 |
Author(s) : Nelson KE , D'Angelo R , Foss ML , Meister GC , Hood DD , Eisenach JC |
Ref : Anesthesiology , 91 :1293 , 1999 |
Abstract : Nelson_1999_Anesthesiology_91_1293 |
ESTHER : Nelson_1999_Anesthesiology_91_1293 |
PubMedSearch : Nelson_1999_Anesthesiology_91_1293 |
PubMedID: 10551579 |
Title : Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima - Nelson_1999_Nature_399_323 |
Author(s) : Nelson KE , Clayton RA , Gill SR , Gwinn ML , Dodson RJ , Haft DH , Hickey EK , Peterson JD , Nelson WC , Ketchum KA , McDonald L , Utterback TR , Malek JA , Linher KD , Garrett MM , Stewart AM , Cotton MD , Pratt MS , Phillips CA , Richardson D , Heidelberg J , Sutton GG , Fleischmann RD , Eisen JA , White O , Salzberg SL , Smith HO , Venter JC , Fraser CM |
Ref : Nature , 399 :323 , 1999 |
Abstract : Nelson_1999_Nature_399_323 |
ESTHER : Nelson_1999_Nature_399_323 |
PubMedSearch : Nelson_1999_Nature_399_323 |
PubMedID: 10360571 |
Gene_locus related to this paper: thema-ESTA , thema-q9x0d6 , thema-q9x042 , thema-TM0033 , thema-TM0053 , thema-TM0077 , thema-TM0336 , thema-TM1160 , thema-TM1350 |