Lapidus A

Title : Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus - de Vries_2017_Genome.Biol_18_28

Author(s) : de Vries RP , Riley R , Wiebenga A , Aguilar-Osorio G , Amillis S , Uchima CA , Anderluh G , Asadollahi M , Askin M , Barry K , Battaglia E , Bayram O , Benocci T , Braus-Stromeyer SA , Caldana C , Canovas D , Cerqueira GC , Chen F , Chen W , Choi C , Clum A , Dos Santos RA , Damasio AR , Diallinas G , Emri T , Fekete E , Flipphi M , Freyberg S , Gallo A , Gournas C , Habgood R , Hainaut M , Harispe ML , Henrissat B , Hilden KS , Hope R , Hossain A , Karabika E , Karaffa L , Karanyi Z , Krasevec N , Kuo A , Kusch H , LaButti K , Lagendijk EL , Lapidus A , Levasseur A , Lindquist E , Lipzen A , Logrieco AF , Maccabe A , Makela MR , Malavazi I , Melin P , Meyer V , Mielnichuk N , Miskei M , Molnar AP , Mule G , Ngan CY , Orejas M , Orosz E , Ouedraogo JP , Overkamp KM , Park HS , Perrone G , Piumi F , Punt PJ , Ram AF , Ramon A , Rauscher S , Record E , Riano-Pachon DM , Robert V , Rohrig J , Ruller R , Salamov A , Salih NS , Samson RA , Sandor E , Sanguinetti M , Schutze T , Sepcic K , Shelest E , Sherlock G , Sophianopoulou V , Squina FM , Sun H , Susca A , Todd RB , Tsang A , Unkles SE , van de Wiele N , van Rossen-Uffink D , Oliveira JV , Vesth TC , Visser J , Yu JH , Zhou M , Andersen MR , Archer DB , Baker SE , Benoit I , Brakhage AA , Braus GH , Fischer R , Frisvad JC , Goldman GH , Houbraken J , Oakley B , Pocsi I , Scazzocchio C , Seiboth B , vanKuyk PA , Wortman J , Dyer PS , Grigoriev IV

Ref : Genome Biol , 18 :28 , 2017

Abstract : de Vries_2017_Genome.Biol_18_28

ESTHER : de Vries_2017_Genome.Biol_18_28

PubMedSearch : de Vries_2017_Genome.Biol_18_28

PubMedID: 28196534

Gene_locus related to this paper: asptu-a0a1l9nhd0 , aspve-a0a1l9pxx8 , aspve-a0a1l9q4m3 , aspwe-a0a1l9s133 , 9euro-a0a1l9t3v9 , aspwe-a0a1l9rcx6 , aspna-g3y5a6 , aspgl-a0a1l9v4d3 , 9euro-a0a1l9sa36 , aspsb-a0a319eji6 , aspve-a0a1l9px96 , 9euro-a0a1l9tay1 , aspgl-a0a1l9vbc0 , aspc5-a0a1r3rh65 , 9euro-a0a2v5i956 , aspwe-a0a1l9rpp6 , aspna-g3xpw9 , aspve-a0a1l9plv1 , 9euro-a0a1l9tk47 , aspve-a0a1l9pde9 , aspve-a0a1l9pz72 , aspwe-a0a1l9rde6 , 9euro-a0a1l9tdb5 , aspkw-g7xq95 , aspbc-a0a1l9u6h4 , aspbc-a0a1l9u2l4 , asptc-a0a1l9mx83 , aspgl-a0a1l9ve90 , aspve-a0a1l9pvz9 , 9euro-a0a1l9tdh3 , aspc5-a0a1r3rmn9 , aspwe-a0a1l9rlq2 , asptc-a0a1l9nby7 , aspng-a0a100i8t9 , aspc5-a0a1r3rem6 , aspbc-a0a1l9uy89 , aspa1-anee , aspa1-aneh , aspa1-acrc , aspbc-alba , aspa1-acui

Title : Comparative genomics of biotechnologically important yeasts - Riley_2016_Proc.Natl.Acad.Sci.U.S.A_113_9882

Author(s) : Riley R , Haridas S , Wolfe KH , Lopes MR , Hittinger CT , Goker M , Salamov AA , Wisecaver JH , Long TM , Calvey CH , Aerts AL , Barry KW , Choi C , Clum A , Coughlan AY , Deshpande S , Douglass AP , Hanson SJ , Klenk HP , LaButti KM , Lapidus A , Lindquist EA , Lipzen AM , Meier-Kolthoff JP , Ohm RA , Otillar RP , Pangilinan JL , Peng Y , Rokas A , Rosa CA , Scheuner C , Sibirny AA , Slot JC , Stielow JB , Sun H , Kurtzman CP , Blackwell M , Grigoriev IV , Jeffries TW

Ref : Proc Natl Acad Sci U S A , 113 :9882 , 2016

Abstract : Riley_2016_Proc.Natl.Acad.Sci.U.S.A_113_9882

ESTHER : Riley_2016_Proc.Natl.Acad.Sci.U.S.A_113_9882

PubMedSearch : Riley_2016_Proc.Natl.Acad.Sci.U.S.A_113_9882

PubMedID: 27535936

Gene_locus related to this paper: wicaa-a0a1e3nx95 , cybjn-a0a1e4s739 , 9asco-a0a1q2yku6 , ogapd-w1qjr8 , 9asco-a0a1e3pdp5 , lipst-a0a1e3qdq0 , 9asco-a0a1e4tg55

Title : Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34 - Anderson_2016_Stand.Genomic.Sci_11_70

Author(s) : Anderson IJ , DasSarma P , Lucas S , Copeland A , Lapidus A , Del Rio TG , Tice H , Dalin E , Bruce DC , Goodwin L , Pitluck S , Sims D , Brettin TS , Detter JC , Han CS , Larimer F , Hauser L , Land M , Ivanova N , Richardson P , Cavicchioli R , DasSarma S , Woese CR , Kyrpides NC

Ref : Stand Genomic Sci , 11 :70 , 2016

Abstract : Anderson_2016_Stand.Genomic.Sci_11_70

ESTHER : Anderson_2016_Stand.Genomic.Sci_11_70

PubMedSearch : Anderson_2016_Stand.Genomic.Sci_11_70

PubMedID: 27617060

Gene_locus related to this paper: hallt-metxa

Title : Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage - Mosier_2016_Front.Microbiol_7_238

Author(s) : Mosier AC , Miller CS , Frischkorn KR , Ohm RA , Li Z , LaButti K , Lapidus A , Lipzen A , Chen C , Johnson J , Lindquist EA , Pan C , Hettich RL , Grigoriev IV , Singer SW , Banfield JF

Ref : Front Microbiol , 7 :238 , 2016

Abstract : Mosier_2016_Front.Microbiol_7_238

ESTHER : Mosier_2016_Front.Microbiol_7_238

PubMedSearch : Mosier_2016_Front.Microbiol_7_238

PubMedID: 26973616

Gene_locus related to this paper: 9pezi-a0a150vf31 , 9pezi-a0a150uua7 , 9pezi-a0a150uvr8 , 9pezi-a0a150uzg0 , 9pezi-a0a150v0d4 , 9pezi-a0a150v5h7 , 9pezi-a0a150v662 , 9pezi-a0a150v8z3 , 9pezi-a0a150v9v5 , 9pezi-a0a150vc68 , 9pezi-a0a150vcp1 , 9pezi-a0a150vd70 , 9pezi-a0a150vda0 , 9pezi-a0a150vgv5 , 9pezi-a0a150vil1 , 9pezi-a0a150uu68 , 9pezi-a0a150vas8 , 9pezi-a0a150vji1 , 9pezi-a0a150vii2

Title : Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds - Hwang_2016_Genome.Announc_4_e01226

Author(s) : Hwang C , Copeland A , Lucas S , Lapidus A , Barry K , Detter JC , Glavina Del Rio T , Hammon N , Israni S , Dalin E , Tice H , Pitluck S , Chertkov O , Brettin T , Bruce D , Han C , Schmutz J , Larimer F , Land ML , Hauser L , Kyrpides N , Mikhailova N , Ye Q , Zhou J , Richardson P , Fields MW

Ref : Genome Announc , 4 : , 2016

Abstract : Hwang_2016_Genome.Announc_4_e01226

ESTHER : Hwang_2016_Genome.Announc_4_e01226

PubMedSearch : Hwang_2016_Genome.Announc_4_e01226

PubMedID: 27811105

Gene_locus related to this paper: alkmq-a6tu78

Title : Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift - Liolos_2013_Stand.Genomic.Sci_8_165

Author(s) : Liolos K , Abt B , Scheuner C , Teshima H , Held B , Lapidus A , Nolan M , Lucas S , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Huntemann M , Pati A , Chen A , Palaniappan K , Land M , Rohde M , Tindall BJ , Detter JC , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Woyke T , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 8 :165 , 2013

Abstract : Liolos_2013_Stand.Genomic.Sci_8_165

ESTHER : Liolos_2013_Stand.Genomic.Sci_8_165

PubMedSearch : Liolos_2013_Stand.Genomic.Sci_8_165

PubMedID: 23991249

Gene_locus related to this paper: spiaz-h9uj53

Title : Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema - Abt_2013_Stand.Genomic.Sci_8_88

Author(s) : Abt B , Goker M , Scheuner C , Han C , Lu M , Misra M , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Huntemann M , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Jeffries CD , Rohde M , Spring S , Gronow S , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Woyke T , Klenk HP

Ref : Stand Genomic Sci , 8 :88 , 2013

Abstract : Abt_2013_Stand.Genomic.Sci_8_88

ESTHER : Abt_2013_Stand.Genomic.Sci_8_88

PubMedSearch : Abt_2013_Stand.Genomic.Sci_8_88

PubMedID: 23961314

Gene_locus related to this paper: trech-f8f1l1

Title : Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8 - Kits_2013_Genome.Announc_1_e0017013

Author(s) : Kits KD , Kalyuzhnaya MG , Klotz MG , Jetten MS , Op den Camp HJ , Vuilleumier S , Bringel F , DiSpirito AA , Murrell JC , Bruce D , Cheng JF , Copeland A , Goodwin L , Hauser L , Lajus A , Land ML , Lapidus A , Lucas S , Medigue C , Pitluck S , Woyke T , Zeytun A , Stein LY

Ref : Genome Announc , 1 :e0017013 , 2013

Abstract : Kits_2013_Genome.Announc_1_e0017013

ESTHER : Kits_2013_Genome.Announc_1_e0017013

PubMedSearch : Kits_2013_Genome.Announc_1_e0017013

PubMedID: 23580712

Title : Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug) - Stackebrandt_2013_Stand.Genomic.Sci_8_15

Author(s) : Stackebrandt E , Zeytun A , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Huntemann M , Pati A , Chen A , Palaniappan K , Chang YJ , Land M , Hauser L , Rohde M , Pukall R , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 8 :15 , 2013

Abstract : Stackebrandt_2013_Stand.Genomic.Sci_8_15

ESTHER : Stackebrandt_2013_Stand.Genomic.Sci_8_15

PubMedSearch : Stackebrandt_2013_Stand.Genomic.Sci_8_15

PubMedID: 23961308

Gene_locus related to this paper: corgp-f2n8w7

Title : Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)) - Anderson_2012_Stand.Genomic.Sci_7_210

Author(s) : Anderson I , Munk C , Lapidus A , Nolan M , Lucas S , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Goodwin L , Pitluck S , Liolios K , Mavromatis K , Pagani I , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Rohde M , Tindall BJ , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Ivanova N

Ref : Stand Genomic Sci , 7 :210 , 2012

Abstract : Anderson_2012_Stand.Genomic.Sci_7_210

ESTHER : Anderson_2012_Stand.Genomic.Sci_7_210

PubMedSearch : Anderson_2012_Stand.Genomic.Sci_7_210

PubMedID: 23408178

Title : Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis - Fernandez-Fueyo_2012_Proc.Natl.Acad.Sci.U.S.A_109_5458

Author(s) : Fernandez-Fueyo E , Ruiz-Duenas FJ , Ferreira P , Floudas D , Hibbett DS , Canessa P , Larrondo LF , James TY , Seelenfreund D , Lobos S , Polanco R , Tello M , Honda Y , Watanabe T , Ryu JS , Kubicek CP , Schmoll M , Gaskell J , Hammel KE , St John FJ , Vanden Wymelenberg A , Sabat G , Splinter BonDurant S , Syed K , Yadav JS , Doddapaneni H , Subramanian V , Lavin JL , Oguiza JA , Perez G , Pisabarro AG , Ramirez L , Santoyo F , Master E , Coutinho PM , Henrissat B , Lombard V , Magnuson JK , Kues U , Hori C , Igarashi K , Samejima M , Held BW , Barry KW , LaButti KM , Lapidus A , Lindquist EA , Lucas SM , Riley R , Salamov AA , Hoffmeister D , Schwenk D , Hadar Y , Yarden O , de Vries RP , Wiebenga A , Stenlid J , Eastwood D , Grigoriev IV , Berka RM , Blanchette RA , Kersten P , Martinez AT , Vicuna R , Cullen D

Ref : Proc Natl Acad Sci U S A , 109 :5458 , 2012

Abstract : Fernandez-Fueyo_2012_Proc.Natl.Acad.Sci.U.S.A_109_5458

ESTHER : Fernandez-Fueyo_2012_Proc.Natl.Acad.Sci.U.S.A_109_5458

PubMedSearch : Fernandez-Fueyo_2012_Proc.Natl.Acad.Sci.U.S.A_109_5458

PubMedID: 22434909

Gene_locus related to this paper: cers8-m2r3x2 , cers8-m2qf37 , cers8-m2pcy7 , cers8-m2pcz3 , cers8-m2qn26 , cers8-m2r654 , cers8-m2r8g9 , cers8-m2ps90 , cers8-m2qn44 , cers8-m2q837 , cers8-m2pjy6 , cers8-m2r609 , cers8-m2qy35 , cers8-m2r1n1 , cers8-m2rl22 , cers8-m2qkx5 , cers8-m2qib7 , cers8-m2rgs8 , cers8-m2rlx6 , cers8-m2r4p3 , cers8-m2rf62 , cers8-m2qyx5 , cers8-m2pcz2 , cers8-m2rm22 , cers8-m2qwb7 , cers8-m2r9u3 , cers8-m2pp23 , cers8-m2r613 , cers8-m2rup8 , cers8-m2piv7 , cers8-m2rch3 , cers8-m2qvf7 , cers8-m2qvb7 , cers8-m2qvb2 , cers8-m2pip7 , cers8-m2rb73 , cers8-m2qgd3 , cers8-m2rcg8 , cers8-m2rb68

Title : The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry - de Wit_2012_PLoS.Genet_8_E1003088

Author(s) : de Wit PJ , van der Burgt A , Okmen B , Stergiopoulos I , Abd-Elsalam KA , Aerts AL , Bahkali AH , Beenen HG , Chettri P , Cox MP , Datema E , de Vries RP , Dhillon B , Ganley AR , Griffiths SA , Guo Y , Hamelin RC , Henrissat B , Kabir MS , Jashni MK , Kema G , Klaubauf S , Lapidus A , Levasseur A , Lindquist E , Mehrabi R , Ohm RA , Owen TJ , Salamov A , Schwelm A , Schijlen E , Sun H , van den Burg HA , van Ham RC , Zhang S , Goodwin SB , Grigoriev IV , Collemare J , Bradshaw RE

Ref : PLoS Genet , 8 :e1003088 , 2012

Abstract : de Wit_2012_PLoS.Genet_8_E1003088

ESTHER : de Wit_2012_PLoS.Genet_8_E1003088

PubMedSearch : de Wit_2012_PLoS.Genet_8_E1003088

PubMedID: 23209441

Gene_locus related to this paper: mycpj-q30dw8 , mycp1-n1pnd6 , mycp1-n1per0 , mycp1-n1pg49 , mycp1-n1pwj1 , mycp1-n1pcl8 , mycp1-m2y2b1 , mycp1-n1pwu7 , mycp1-n1ppa8 , mycp1-m2yk59 , mycp1-n1pps5 , mycp1-n1pw13 , mycp1-n1pe19 , mycp1-m2xhl1 , mycp1-n1pnh6 , mycp1-n1psn5 , mycp1-n1puh9 , mycp1-n1phf7 , mycp1-m2y2h4 , mycp1-n1q523 , dotsn-n1q1b1 , dotsn-n1q415 , dotsn-est1

Title : Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)) - Riedel_2012_Stand.Genomic.Sci_7_107

Author(s) : Riedel T , Held B , Nolan M , Lucas S , Lapidus A , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Goodwin LA , Pitluck S , Liolios K , Mavromatis K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Rohde M , Tindall BJ , Detter JC , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T

Ref : Stand Genomic Sci , 7 :107 , 2012

Abstract : Riedel_2012_Stand.Genomic.Sci_7_107

ESTHER : Riedel_2012_Stand.Genomic.Sci_7_107

PubMedSearch : Riedel_2012_Stand.Genomic.Sci_7_107

PubMedID: 23450183

Gene_locus related to this paper: 9flao-h2bu38

Title : Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T - Pester_2012_J.Bacteriol_194_6300

Author(s) : Pester M , Brambilla E , Alazard D , Rattei T , Weinmaier T , Han J , Lucas S , Lapidus A , Cheng JF , Goodwin L , Pitluck S , Peters L , Ovchinnikova G , Teshima H , Detter JC , Han CS , Tapia R , Land ML , Hauser L , Kyrpides NC , Ivanova NN , Pagani I , Huntmann M , Wei CL , Davenport KW , Daligault H , Chain PS , Chen A , Mavromatis K , Markowitz V , Szeto E , Mikhailova N , Pati A , Wagner M , Woyke T , Ollivier B , Klenk HP , Spring S , Loy A

Ref : Journal of Bacteriology , 194 :6300 , 2012

Abstract : Pester_2012_J.Bacteriol_194_6300

ESTHER : Pester_2012_J.Bacteriol_194_6300

PubMedSearch : Pester_2012_J.Bacteriol_194_6300

PubMedID: 23105050

Gene_locus related to this paper: desaj-i4dc82 , desmd-j7j1v2 , desod-g7wg97 , desaj-i4d5q8

Title : Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney - Copeland_2012_Stand.Genomic.Sci_6_21

Author(s) : Copeland A , Gu W , Yasawong M , Lapidus A , Lucas S , Deshpande S , Pagani I , Tapia R , Cheng JF , Goodwin LA , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Pan C , Brambilla EM , Rohde M , Tindall BJ , Sikorski J , Goker M , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T

Ref : Stand Genomic Sci , 6 :21 , 2012

Abstract : Copeland_2012_Stand.Genomic.Sci_6_21

ESTHER : Copeland_2012_Stand.Genomic.Sci_6_21

PubMedSearch : Copeland_2012_Stand.Genomic.Sci_6_21

PubMedID: 22675595

Gene_locus related to this paper: marht-f2nq80

Title : Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)) - Anderson_2012_Stand.Genomic.Sci_6_31

Author(s) : Anderson I , Tindall BJ , Rohde M , Lucas S , Han J , Lapidus A , Cheng JF , Goodwin L , Pitluck S , Peters L , Pati A , Mikhailova N , Pagani I , Teshima H , Han C , Tapia R , Land M , Woyke T , Klenk HP , Kyrpides N , Ivanova N

Ref : Stand Genomic Sci , 6 :31 , 2012

Abstract : Anderson_2012_Stand.Genomic.Sci_6_31

ESTHER : Anderson_2012_Stand.Genomic.Sci_6_31

PubMedSearch : Anderson_2012_Stand.Genomic.Sci_6_31

PubMedID: 22675596

Gene_locus related to this paper: halxs-f8dda6

Title : Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)) - Klenk_2012_Stand.Genomic.Sci_6_265

Author(s) : Klenk HP , Lu M , Lucas S , Lapidus A , Copeland A , Pitluck S , Goodwin LA , Han C , Tapia R , Brambilla EM , Potter G , Land M , Ivanova N , Rohde M , Goker M , Detter JC , Li WJ , Kyrpides NC , Woyke T

Ref : Stand Genomic Sci , 6 :265 , 2012

Abstract : Klenk_2012_Stand.Genomic.Sci_6_265

ESTHER : Klenk_2012_Stand.Genomic.Sci_6_265

PubMedSearch : Klenk_2012_Stand.Genomic.Sci_6_265

PubMedID: 22768369

Gene_locus related to this paper: 9pseu-h5x8w4 , 9pseu-h5x5e2 , 9pseu-h5xbd6 , 9pseu-h5x783

Title : Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128(T)) - Klenk_2012_Stand.Genomic.Sci_6_220

Author(s) : Klenk HP , Held B , Lucas S , Lapidus A , Copeland A , Hammon N , Pitluck S , Goodwin LA , Han C , Tapia R , Brambilla EM , Potter G , Land M , Ivanova N , Rohde M , Goker M , Detter JC , Kyrpides NC , Woyke T

Ref : Stand Genomic Sci , 6 :220 , 2012

Abstract : Klenk_2012_Stand.Genomic.Sci_6_220

ESTHER : Klenk_2012_Stand.Genomic.Sci_6_220

PubMedSearch : Klenk_2012_Stand.Genomic.Sci_6_220

PubMedID: 22768365

Gene_locus related to this paper: 9pseu-h8gca1 , 9pseu-h0k1d7 , 9pseu-h0k6z7

Title : Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)) - Riedel_2012_Stand.Genomic.Sci_7_120

Author(s) : Riedel T , Held B , Nolan M , Lucas S , Lapidus A , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Goodwin LA , Pitluck S , Liolios K , Mavromatis K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Rohde M , Tindall BJ , Detter JC , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 7 :120 , 2012

Abstract : Riedel_2012_Stand.Genomic.Sci_7_120

ESTHER : Riedel_2012_Stand.Genomic.Sci_7_120

PubMedSearch : Riedel_2012_Stand.Genomic.Sci_7_120

PubMedID: 23450211

Gene_locus related to this paper: owehd-g8r0w8

Title : Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9 - Neupane_2012_Stand.Genomic.Sci_6_54

Author(s) : Neupane S , Hogberg N , Alstrom S , Lucas S , Han J , Lapidus A , Cheng JF , Bruce D , Goodwin L , Pitluck S , Peters L , Ovchinnikova G , Lu M , Han C , Detter JC , Tapia R , Fiebig A , Land M , Hauser L , Kyrpides NC , Ivanova N , Pagani I , Klenk HP , Woyke T , Finlay RD

Ref : Stand Genomic Sci , 6 :54 , 2012

Abstract : Neupane_2012_Stand.Genomic.Sci_6_54

ESTHER : Neupane_2012_Stand.Genomic.Sci_6_54

PubMedSearch : Neupane_2012_Stand.Genomic.Sci_6_54

PubMedID: 22675598

Gene_locus related to this paper: serpl-s0ae95 , serpl-s0aiv6 , sersa-g0bfi6 , serp5-a8gjr8 , serpl-s4yi15

Title : Complete genome sequence of Serratia plymuthica strain AS12 - Neupane_2012_Stand.Genomic.Sci_6_165

Author(s) : Neupane S , Finlay RD , Alstrom S , Goodwin L , Kyrpides NC , Lucas S , Lapidus A , Bruce D , Pitluck S , Peters L , Ovchinnikova G , Chertkov O , Han J , Han C , Tapia R , Detter JC , Land M , Hauser L , Cheng JF , Ivanova N , Pagani I , Klenk HP , Woyke T , Hogberg N

Ref : Stand Genomic Sci , 6 :165 , 2012

Abstract : Neupane_2012_Stand.Genomic.Sci_6_165

ESTHER : Neupane_2012_Stand.Genomic.Sci_6_165

PubMedSearch : Neupane_2012_Stand.Genomic.Sci_6_165

PubMedID: 22768360

Gene_locus related to this paper: serpl-s0ae95 , serpl-s0aiv6 , sersa-g0bfi6 , serpl-i3aik7 , serpl-s4yi15

Title : Complete genome sequence of the plant-associated Serratia plymuthica strain AS13 - Neupane_2012_Stand.Genomic.Sci_7_22

Author(s) : Neupane S , Finlay RD , Kyrpides NC , Goodwin L , Alstrom S , Lucas S , Land M , Han J , Lapidus A , Cheng JF , Bruce D , Pitluck S , Peters L , Ovchinnikova G , Held B , Han C , Detter JC , Tapia R , Hauser L , Ivanova N , Pagani I , Woyke T , Klenk HP , Hogberg N

Ref : Stand Genomic Sci , 7 :22 , 2012

Abstract : Neupane_2012_Stand.Genomic.Sci_7_22

ESTHER : Neupane_2012_Stand.Genomic.Sci_7_22

PubMedSearch : Neupane_2012_Stand.Genomic.Sci_7_22

PubMedID: 23450001

Gene_locus related to this paper: serpl-s0ae95 , serpl-s0aiv6 , sersa-g0bfi6 , serp5-a8gjr8 , serpl-s4yi15

Title : Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)) - Han_2012_Stand.Genomic.Sci_6_94

Author(s) : Han C , Kotsyurbenko O , Chertkov O , Held B , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla EM , Rohde M , Spring S , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Detter JC

Ref : Stand Genomic Sci , 6 :94 , 2012

Abstract : Han_2012_Stand.Genomic.Sci_6_94

ESTHER : Han_2012_Stand.Genomic.Sci_6_94

PubMedSearch : Han_2012_Stand.Genomic.Sci_6_94

PubMedID: 22675602

Gene_locus related to this paper: sulky-e4u307

Title : The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction - Padamsee_2012_Fungal.Genet.Biol_49_217

Author(s) : Padamsee M , Kumar TK , Riley R , Binder M , Boyd A , Calvo AM , Furukawa K , Hesse C , Hohmann S , James TY , LaButti K , Lapidus A , Lindquist E , Lucas S , Miller K , Shantappa S , Grigoriev IV , Hibbett DS , McLaughlin DJ , Spatafora JW , Aime MC

Ref : Fungal Genet Biol , 49 :217 , 2012

Abstract : Padamsee_2012_Fungal.Genet.Biol_49_217

ESTHER : Padamsee_2012_Fungal.Genet.Biol_49_217

PubMedSearch : Padamsee_2012_Fungal.Genet.Biol_49_217

PubMedID: 22326418

Gene_locus related to this paper: walsc-i4y6w1 , walmc-i4y5m3

Title : Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T)) - Meincke_2012_Stand.Genomic.Sci_6_74

Author(s) : Meincke L , Copeland A , Lapidus A , Lucas S , Berry KW , Del Rio TG , Hammon N , Dalin E , Tice H , Pitluck S , Richardson P , Bruce D , Goodwin L , Han C , Tapia R , Detter JC , Schmutz J , Brettin T , Larimer F , Land M , Hauser L , Kyrpides NC , Ivanova N , Goker M , Woyke T , Wu QL , Pockl M , Hahn MW , Klenk HP

Ref : Stand Genomic Sci , 6 :74 , 2012

Abstract : Meincke_2012_Stand.Genomic.Sci_6_74

ESTHER : Meincke_2012_Stand.Genomic.Sci_6_74

PubMedSearch : Meincke_2012_Stand.Genomic.Sci_6_74

PubMedID: 22675600

Gene_locus related to this paper: polsq-a4sxg1 , polsq-a4sxf4

Title : Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park - Mead_2012_Stand.Genomic.Sci_6_381

Author(s) : Mead DA , Lucas S , Copeland A , Lapidus A , Cheng JF , Bruce DC , Goodwin LA , Pitluck S , Chertkov O , Zhang X , Detter JC , Han CS , Tapia R , Land M , Hauser LJ , Chang YJ , Kyrpides NC , Ivanova NN , Ovchinnikova G , Woyke T , Brumm C , Hochstein R , Schoenfeld T , Brumm P

Ref : Stand Genomic Sci , 6 :381 , 2012

Abstract : Mead_2012_Stand.Genomic.Sci_6_381

ESTHER : Mead_2012_Stand.Genomic.Sci_6_381

PubMedSearch : Mead_2012_Stand.Genomic.Sci_6_381

PubMedID: 23408395

Gene_locus related to this paper: geos4-d3efm9

Title : Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)) - Kappler_2012_Stand.Genomic.Sci_7_44

Author(s) : Kappler U , Davenport K , Beatson S , Lucas S , Lapidus A , Copeland A , Berry KW , Glavina Del Rio T , Hammon N , Dalin E , Tice H , Pitluck S , Richardson P , Bruce D , Goodwin LA , Han C , Tapia R , Detter JC , Chang YJ , Jeffries CD , Land M , Hauser L , Kyrpides NC , Goker M , Ivanova N , Klenk HP , Woyke T

Ref : Stand Genomic Sci , 7 :44 , 2012

Abstract : Kappler_2012_Stand.Genomic.Sci_7_44

ESTHER : Kappler_2012_Stand.Genomic.Sci_7_44

PubMedSearch : Kappler_2012_Stand.Genomic.Sci_7_44

PubMedID: 23450099

Gene_locus related to this paper: stand-d7a8r1

Title : Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize - Suzuki_2012_BMC.Genomics_13_444

Author(s) : Suzuki H , MacDonald J , Syed K , Salamov A , Hori C , Aerts A , Henrissat B , Wiebenga A , vanKuyk PA , Barry K , Lindquist E , LaButti K , Lapidus A , Lucas S , Coutinho P , Gong Y , Samejima M , Mahadevan R , Abou-Zaid M , de Vries RP , Igarashi K , Yadav JS , Grigoriev IV , Master ER

Ref : BMC Genomics , 13 :444 , 2012

Abstract : Suzuki_2012_BMC.Genomics_13_444

ESTHER : Suzuki_2012_BMC.Genomics_13_444

PubMedSearch : Suzuki_2012_BMC.Genomics_13_444

PubMedID: 22937793

Gene_locus related to this paper: phacs-k5whx2 , phacs-k5v2s8 , phacs-k5v5r2 , phacs-k5vyk5 , phacs-k5vzf8 , phacs-k5wbu9 , phacs-k5wc10 , phacs-k5wpw0 , phacs-k5wzn6 , phacs-k5x1t8 , phacs-k5x5g6 , phacs-k5x5p4

Title : Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche - Morin_2012_Proc.Natl.Acad.Sci.U.S.A_109_17501

Author(s) : Morin E , Kohler A , Baker AR , Foulongne-Oriol M , Lombard V , Nagy LG , Ohm RA , Patyshakuliyeva A , Brun A , Aerts AL , Bailey AM , Billette C , Coutinho PM , Deakin G , Doddapaneni H , Floudas D , Grimwood J , Hilden K , Kues U , LaButti KM , Lapidus A , Lindquist EA , Lucas SM , Murat C , Riley RW , Salamov AA , Schmutz J , Subramanian V , Wosten HA , Xu J , Eastwood DC , Foster GD , Sonnenberg AS , Cullen D , de Vries RP , Lundell T , Hibbett DS , Henrissat B , Burton KS , Kerrigan RW , Challen MP , Grigoriev IV , Martin F

Ref : Proc Natl Acad Sci U S A , 109 :17501 , 2012

Abstract : Morin_2012_Proc.Natl.Acad.Sci.U.S.A_109_17501

ESTHER : Morin_2012_Proc.Natl.Acad.Sci.U.S.A_109_17501

PubMedSearch : Morin_2012_Proc.Natl.Acad.Sci.U.S.A_109_17501

PubMedID: 23045686

Gene_locus related to this paper: agabu-k5x1b4 , agabu-k5x521 , agabu-k5w389 , agabu-k5wbk9 , agabu-k5wrh0 , agabu-k5ws85 , agabu-k5wsf9 , agabu-k5wxv1 , agabu-k5x0d9 , agabu-k5x588 , agabu-k5x5x2 , agabu-k5xd51 , agabu-k5xh54 , agabu-k5xsm1 , agabu-k5xsp8 , agabu-k5xtc1 , agabu-k5y2v2 , agabb-k9i3g9 , agabb-k9hnv7 , agabb-k9hr46 , agabu-k5wys0

Title : Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)) - Anderson_2012_Stand.Genomic.Sci_6_174

Author(s) : Anderson I , Held B , Lapidus A , Nolan M , Lucas S , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Goodwin LA , Pitluck S , Liolios K , Mavromatis K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Brambilla EM , Rohde M , Spring S , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 6 :174 , 2012

Abstract : Anderson_2012_Stand.Genomic.Sci_6_174

ESTHER : Anderson_2012_Stand.Genomic.Sci_6_174

PubMedSearch : Anderson_2012_Stand.Genomic.Sci_6_174

PubMedID: 22768361

Gene_locus related to this paper: 9bact-h1nzy5

Title : Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) - Mavromatis_2012_Stand.Genomic.Sci_6_210

Author(s) : Mavromatis K , Chertkov O , Lapidus A , Nolan M , Lucas S , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Bruce D , Goodwin LA , Pitluck S , Huntemann M , Liolios K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Brambilla EM , Rohde M , Spring S , Goker M , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T

Ref : Stand Genomic Sci , 6 :210 , 2012

Abstract : Mavromatis_2012_Stand.Genomic.Sci_6_210

ESTHER : Mavromatis_2012_Stand.Genomic.Sci_6_210

PubMedSearch : Mavromatis_2012_Stand.Genomic.Sci_6_210

PubMedID: 22768364

Gene_locus related to this paper: sapgl-h6kz52 , 9bact-j0p3n9

Title : Complete genome sequence of Isosphaera pallida type strain (IS1B) - Goker_2011_Stand.Genomic.Sci_4_63

Author(s) : Goker M , Cleland D , Saunders E , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Beck B , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 4 :63 , 2011

Abstract : Goker_2011_Stand.Genomic.Sci_4_63

ESTHER : Goker_2011_Stand.Genomic.Sci_4_63

PubMedSearch : Goker_2011_Stand.Genomic.Sci_4_63

PubMedID: 21475588

Gene_locus related to this paper: isopi-e8qx42 , isopi-e8qz61 , isopi-e8r2k6 , isopi-e8r4h2 , isopi-e8r5e4 , isopi-e8r123 , isopi-e8qz30

Title : Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21) - Chang_2011_Stand.Genomic.Sci_5_97

Author(s) : Chang YJ , Land M , Hauser L , Chertkov O , Del Rio TG , Nolan M , Copeland A , Tice H , Cheng JF , Lucas S , Han C , Goodwin L , Pitluck S , Ivanova N , Ovchinikova G , Pati A , Chen A , Palaniappan K , Mavromatis K , Liolios K , Brettin T , Fiebig A , Rohde M , Abt B , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 5 :97 , 2011

Abstract : Chang_2011_Stand.Genomic.Sci_5_97

ESTHER : Chang_2011_Stand.Genomic.Sci_5_97

PubMedSearch : Chang_2011_Stand.Genomic.Sci_5_97

PubMedID: 22180814

Gene_locus related to this paper: 9chlr-d6ttv1 , 9chlr-d6thn5 , 9chlr-d6tk73 , 9chlr-d6tzq4 , 9chlr-d6tri7 , 9chlr-d6tuz4 , 9chlr-d6tri9 , 9chlr-d6tsy5 , 9chlr-d6u5k6 , 9chlr-d6u6a8 , 9chlr-d6tye6 , 9chlr-d6tpj9

Title : Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum - Miller_2011_J.Bacteriol_193_2357

Author(s) : Miller DA , Suen G , Bruce D , Copeland A , Cheng JF , Detter C , Goodwin LA , Han CS , Hauser LJ , Land ML , Lapidus A , Lucas S , Meincke L , Pitluck S , Tapia R , Teshima H , Woyke T , Fox BG , Angert ER , Currie CR

Ref : Journal of Bacteriology , 193 :2357 , 2011

Abstract : Miller_2011_J.Bacteriol_193_2357

ESTHER : Miller_2011_J.Bacteriol_193_2357

PubMedSearch : Miller_2011_J.Bacteriol_193_2357

PubMedID: 21398547

Gene_locus related to this paper: celld-f2js06

Title : Complete genome sequence of Thermomonospora curvata type strain (B9) - Chertkov_2011_Stand.Genomic.Sci_4_13

Author(s) : Chertkov O , Sikorski J , Nolan M , Lapidus A , Lucas S , Del Rio TG , Tice H , Cheng JF , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Djao OD , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Han C , Detter JC , Rohde M , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 4 :13 , 2011

Abstract : Chertkov_2011_Stand.Genomic.Sci_4_13

ESTHER : Chertkov_2011_Stand.Genomic.Sci_4_13

PubMedSearch : Chertkov_2011_Stand.Genomic.Sci_4_13

PubMedID: 21475583

Gene_locus related to this paper: thecd-d1a9g5 , thecd-d1a2h1 , thecd-d1a1k1 , thecd-d1a1x8 , thecd-d1a2g9 , thecd-d1a3k3 , thecd-d1a4i6 , thecd-d1a7b6 , thecd-d1a8l9 , thecd-d1a9a3 , thecd-d1a9i2 , thecd-d1a9k7 , thecd-d1a765 , thecd-d1a838 , thecd-d1a847 , thecd-d1aah2 , thecd-d1abb9 , thecd-d1abi3 , thecd-d1abk7 , thecd-d1abn5 , thecd-d1acm8 , thecd-d1acs0 , thecd-d1adv4 , thecd-d1adw6 , thecd-d1aef0 , thecd-d1aat0 , thecd-d1aat5 , thecd-d1aat1 , thecd-d1a9g2 , thecd-d1aep2 , thecd-d1a6x9 , thecd-d1ab99

Title : Genome sequence of Chthoniobacter flavus Ellin428, an aerobic heterotrophic soil bacterium - Kant_2011_J.Bacteriol_193_2902

Author(s) : Kant R , van Passel MW , Palva A , Lucas S , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Larimer FW , Land ML , Hauser L , Sangwan P , de Vos WM , Janssen PH , Smidt H

Ref : Journal of Bacteriology , 193 :2902 , 2011

Abstract : Kant_2011_J.Bacteriol_193_2902

ESTHER : Kant_2011_J.Bacteriol_193_2902

PubMedSearch : Kant_2011_J.Bacteriol_193_2902

PubMedID: 21460085

Gene_locus related to this paper: 9bact-b4cw55 , 9bact-b4cx55 , 9bact-b4cy19 , 9bact-b4cyt2 , 9bact-b4cyu5 , 9bact-b4cza3 , 9bact-b4d1u0 , 9bact-b4d2s5 , 9bact-b4d373 , 9bact-b4d393 , 9bact-b4d914 , 9bact-b4daa7 , 9bact-b4dav5 , 9bact-b4db04 , 9bact-b4dc95 , 9bact-b4d3q8.1 , 9bact-b4d3q8.2

Title : Complete genome sequence of Leadbetterella byssophila type strain (4M15) - Abt_2011_Stand.Genomic.Sci_4_2

Author(s) : Abt B , Teshima H , Lucas S , Lapidus A , Del Rio TG , Nolan M , Tice H , Cheng JF , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Pati A , Tapia R , Han C , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Tindall BJ , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 4 :2 , 2011

Abstract : Abt_2011_Stand.Genomic.Sci_4_2

ESTHER : Abt_2011_Stand.Genomic.Sci_4_2

PubMedSearch : Abt_2011_Stand.Genomic.Sci_4_2

PubMedID: 21475582

Gene_locus related to this paper: leab4-e4rqy5 , leab4-e4ru27 , leab4-e4ruf5 , leab4-e4rul3 , leab4-e4rut6 , leab4-e4rwa2 , leab4-e4rwt5 , leab4-e4rwv8 , leab4-e4ry52 , leab4-e4rzw2

Title : Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1) - Pitluck_2011_Stand.Genomic.Sci_4_54

Author(s) : Pitluck S , Sikorski J , Zeytun A , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Han C , Goodwin L , Liolios K , Pagani I , Ivanova N , Mavromatis K , Pati A , Chen A , Palaniappan K , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brambilla E , Djao OD , Rohde M , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Land M

Ref : Stand Genomic Sci , 4 :54 , 2011

Abstract : Pitluck_2011_Stand.Genomic.Sci_4_54

ESTHER : Pitluck_2011_Stand.Genomic.Sci_4_54

PubMedSearch : Pitluck_2011_Stand.Genomic.Sci_4_54

PubMedID: 21475587

Title : Genome sequence of Pedosphaera parvula Ellin514, an aerobic Verrucomicrobial isolate from pasture soil - Kant_2011_J.Bacteriol_193_2900

Author(s) : Kant R , van Passel MW , Sangwan P , Palva A , Lucas S , Copeland A , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Chertkov O , Larimer FW , Land ML , Hauser L , Brettin TS , Detter JC , Han S , de Vos WM , Janssen PH , Smidt H

Ref : Journal of Bacteriology , 193 :2900 , 2011

Abstract : Kant_2011_J.Bacteriol_193_2900

ESTHER : Kant_2011_J.Bacteriol_193_2900

PubMedSearch : Kant_2011_J.Bacteriol_193_2900

PubMedID: 21460084

Gene_locus related to this paper: 9bact-b9xah7.1 , 9bact-b9xah7.2 , 9bact-b9xba2 , 9bact-b9xfz4 , 9bact-b9xh19 , 9bact-b9xhn8 , 9bact-b9xj62 , 9bact-b9xjh1 , 9bact-b9xku6 , 9bact-b9xku8 , 9bact-b9xnx1 , 9bact-b9xp64 , 9bact-b9xp74

Title : Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti - Galardini_2011_BMC.Genomics_12_235

Author(s) : Galardini M , Mengoni A , Brilli M , Pini F , Fioravanti A , Lucas S , Lapidus A , Cheng JF , Goodwin L , Pitluck S , Land M , Hauser L , Woyke T , Mikhailova N , Ivanova N , Daligault H , Bruce D , Detter C , Tapia R , Han C , Teshima H , Mocali S , Bazzicalupo M , Biondi EG

Ref : BMC Genomics , 12 :235 , 2011

Abstract : Galardini_2011_BMC.Genomics_12_235

ESTHER : Galardini_2011_BMC.Genomics_12_235

PubMedSearch : Galardini_2011_BMC.Genomics_12_235

PubMedID: 21569405

Gene_locus related to this paper: rhime-PCAD , rhime-RB1395 , sinmb-a0a0e0ub90

Title : Complete genome sequence of Marivirga tractuosa type strain (H-43) - Pagani_2011_Stand.Genomic.Sci_4_154

Author(s) : Pagani I , Chertkov O , Lapidus A , Lucas S , Del Rio TG , Tice H , Copeland A , Cheng JF , Nolan M , Saunders E , Pitluck S , Held B , Goodwin L , Liolios K , Ovchinikova G , Ivanova N , Mavromatis K , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Jeffries CD , Detter JC , Han C , Tapia R , Ngatchou-Djao OD , Rohde M , Goker M , Spring S , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 4 :154 , 2011

Abstract : Pagani_2011_Stand.Genomic.Sci_4_154

ESTHER : Pagani_2011_Stand.Genomic.Sci_4_154

PubMedSearch : Pagani_2011_Stand.Genomic.Sci_4_154

PubMedID: 21677852

Gene_locus related to this paper: marth-e4tt12

Title : Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma - Ellison_2011_Genetics_189_55

Author(s) : Ellison CE , Stajich JE , Jacobson DJ , Natvig DO , Lapidus A , Foster B , Aerts A , Riley R , Lindquist EA , Grigoriev IV , Taylor JW

Ref : Genetics , 189 :55 , 2011

Abstract : Ellison_2011_Genetics_189_55

ESTHER : Ellison_2011_Genetics_189_55

PubMedSearch : Ellison_2011_Genetics_189_55

PubMedID: 21750257

Gene_locus related to this paper: neucr-90C4.300 , neucr-B19A17.360 , neucr-B23G1.090 , neucr-NCU00292.1 , neucr-NCU02679.1 , neucr-NCU04930.1 , neucr-NCU06573.1 , neucr-NCU08752.1 , neucr-NCU09575.1 , neucr-NCU10022.1 , neucr-q7s1x0 , neucr-q7s216 , neucr-q7s259 , neucr-q7s260 , neucr-q7scr4 , neut8-f8n463 , neut9-g4uk39 , neucr-f5hbr2 , neut8-f8mcp7 , neucr-q7ry64 , neucr-FAED , neut8-f8mrh8

Title : Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313 - Feinberg_2011_J.Bacteriol_193_2906

Author(s) : Feinberg L , Foden J , Barrett T , Davenport KW , Bruce D , Detter C , Tapia R , Han C , Lapidus A , Lucas S , Cheng JF , Pitluck S , Woyke T , Ivanova N , Mikhailova N , Land M , Hauser L , Argyros DA , Goodwin L , Hogsett D , Caiazza N

Ref : Journal of Bacteriology , 193 :2906 , 2011

Abstract : Feinberg_2011_J.Bacteriol_193_2906

ESTHER : Feinberg_2011_J.Bacteriol_193_2906

PubMedSearch : Feinberg_2011_J.Bacteriol_193_2906

PubMedID: 21460082

Gene_locus related to this paper: cloth-a3dgp4 , cloth-a3dhx6 , clotm-c7hgp9 , clotm-c7hjn0

Title : Complete genome sequence of Bacteroides salanitronis type strain (BL78) - Gronow_2011_Stand.Genomic.Sci_4_191

Author(s) : Gronow S , Held B , Lucas S , Lapidus A , Del Rio TG , Nolan M , Tice H , Deshpande S , Cheng JF , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Pati A , Tapia R , Han C , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla EM , Rohde M , Goker M , Detter JC , Woyke T , Bristow J , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Eisen JA

Ref : Stand Genomic Sci , 4 :191 , 2011

Abstract : Gronow_2011_Stand.Genomic.Sci_4_191

ESTHER : Gronow_2011_Stand.Genomic.Sci_4_191

PubMedSearch : Gronow_2011_Stand.Genomic.Sci_4_191

PubMedID: 21677856

Gene_locus related to this paper: bacsh-f0qz10 , bacsh-f0qz83 , bacsh-f0r0m7 , bacsh-f0r0s7 , bacsh-f0r5r9 , bacsh-f0r030 , bacsh-f0r440 , bacsh-f0r869 , bacsh-f0qzb0 , bacsh-f0r6i2

Title : Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract - van Passel_2011_J.Bacteriol_193_2373

Author(s) : van Passel MW , Kant R , Palva A , Lucas S , Copeland A , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Davenport KW , Sims D , Brettin TS , Detter JC , Han S , Larimer FW , Land ML , Hauser L , Kyrpides N , Ovchinnikova G , Richardson PP , de Vos WM , Smidt H , Zoetendal EG

Ref : Journal of Bacteriology , 193 :2373 , 2011

Abstract : van Passel_2011_J.Bacteriol_193_2373

ESTHER : van Passel_2011_J.Bacteriol_193_2373

PubMedSearch : van Passel_2011_J.Bacteriol_193_2373

PubMedID: 21398537

Gene_locus related to this paper: 9bact-d1n3e0 , 9bact-d1n3w1 , 9bact-d1n5u2 , 9bact-d1n6r9 , 9bact-d1n8l2 , 9bact-d1n8z8 , 9bact-d1n9n1 , 9bact-d1n9u1 , 9bact-d1n752 , 9bact-d1n881 , 9bact-d1naa7 , 9bact-d1nb62 , 9bact-d1nbd5 , 9bact-d1nbg1 , 9bact-d1nbh9 , 9bact-d1nbv9

Title : Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3) - Kallimanis_2011_Stand.Genomic.Sci_4_123

Author(s) : Kallimanis A , LaButti KM , Lapidus A , Clum A , Lykidis A , Mavromatis K , Pagani I , Liolios K , Ivanova N , Goodwin L , Pitluck S , Chen A , Palaniappan K , Markowitz V , Bristow J , Velentzas AD , Perisynakis A , Ouzounis CC , Kyrpides NC , Koukkou AI , Drainas C

Ref : Stand Genomic Sci , 4 :123 , 2011

Abstract : Kallimanis_2011_Stand.Genomic.Sci_4_123

ESTHER : Kallimanis_2011_Stand.Genomic.Sci_4_123

PubMedSearch : Kallimanis_2011_Stand.Genomic.Sci_4_123

PubMedID: 21677849

Gene_locus related to this paper: artpp-f0m1v4 , artpp-f0m1v5 , artpp-f0m2s7 , artpp-f0m5g1 , artpp-f0m7u7 , artpp-f0m8i0 , artpp-f0m8w6 , artpp-f0m8w7 , artpp-f0m393 , artpp-f0mb51

Title : Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190 - Sales_2011_J.Bacteriol_193_4549

Author(s) : Sales CM , Mahendra S , Grostern A , Parales RE , Goodwin LA , Woyke T , Nolan M , Lapidus A , Chertkov O , Ovchinnikova G , Sczyrba A , Alvarez-Cohen L

Ref : Journal of Bacteriology , 193 :4549 , 2011

Abstract : Sales_2011_J.Bacteriol_193_4549

ESTHER : Sales_2011_J.Bacteriol_193_4549

PubMedSearch : Sales_2011_J.Bacteriol_193_4549

PubMedID: 21725009

Gene_locus related to this paper: 9pseu-f4ck55 , 9pseu-f4cxt1 , pseux-f4cs60 , pseux-f4cva7 , pseux-f4czc7 , pseux-f4czf1 , pseux-f4czh4 , pseux-f4crs9 , pseux-f4cs44 , pseux-f4cw88 , pseux-f4cxn4

Title : The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi - Eastwood_2011_Science_333_762

Author(s) : Eastwood DC , Floudas D , Binder M , Majcherczyk A , Schneider P , Aerts A , Asiegbu FO , Baker SE , Barry K , Bendiksby M , Blumentritt M , Coutinho PM , Cullen D , de Vries RP , Gathman A , Goodell B , Henrissat B , Ihrmark K , Kauserud H , Kohler A , LaButti K , Lapidus A , Lavin JL , Lee YH , Lindquist E , Lilly W , Lucas S , Morin E , Murat C , Oguiza JA , Park J , Pisabarro AG , Riley R , Rosling A , Salamov A , Schmidt O , Schmutz J , Skrede I , Stenlid J , Wiebenga A , Xie X , Kues U , Hibbett DS , Hoffmeister D , Hogberg N , Martin F , Grigoriev IV , Watkinson SC

Ref : Science , 333 :762 , 2011

Abstract : Eastwood_2011_Science_333_762

ESTHER : Eastwood_2011_Science_333_762

PubMedSearch : Eastwood_2011_Science_333_762

PubMedID: 21764756

Gene_locus related to this paper: serl3-f8prj2 , serl3-f8qcc4 , serl9-f8ngp6 , serl9-f8nhd7 , serl9-f8nhq9 , serl9-f8nq77 , serl9-f8nr67 , serl9-f8nrt5 , serl9-f8nvy7.1 , serl9-f8nvy7.2 , serl9-f8nvy8 , serl9-f8nxt0.1 , serl9-f8nxt0.2 , serl9-f8nzr3 , serl9-f8p0f0 , serl9-f8p6v0 , serl9-f8p015 , serl9-f8p018 , serl9-f8p386 , serl9-f8paz8 , serl9-f8pbv1 , serl9-f8pby1 , serl9-f8pc25 , serl9-f8pc39 , serl9-f8nia7 , serl3-f8pju2 , serl9-f8peh1 , serl9-nps3

Title : Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614 - Coleman_2011_J.Bacteriol_193_3399

Author(s) : Coleman NV , Wilson NL , Barry K , Brettin TS , Bruce DC , Copeland A , Dalin E , Detter JC , Del Rio TG , Goodwin LA , Hammon NM , Han S , Hauser LJ , Israni S , Kim E , Kyrpides N , Land ML , Lapidus A , Larimer FW , Lucas S , Pitluck S , Richardson P , Schmutz J , Tapia R , Thompson S , Tice HN , Spain JC , Gossett JG , Mattes TE

Ref : Journal of Bacteriology , 193 :3399 , 2011

Abstract : Coleman_2011_J.Bacteriol_193_3399

ESTHER : Coleman_2011_J.Bacteriol_193_3399

PubMedSearch : Coleman_2011_J.Bacteriol_193_3399

PubMedID: 21551312

Gene_locus related to this paper: nocsj-a1sil5

Title : Complete genome sequence of Thioalkalivibrio sulfidophilus HL-EbGr7 - Muyzer_2011_Stand.Genomic.Sci_4_23

Author(s) : Muyzer G , Sorokin DY , Mavromatis K , Lapidus A , Clum A , Ivanova N , Pati A , D'Haeseleer P , Woyke T , Kyrpides NC

Ref : Stand Genomic Sci , 4 :23 , 2011

Abstract : Muyzer_2011_Stand.Genomic.Sci_4_23

ESTHER : Muyzer_2011_Stand.Genomic.Sci_4_23

PubMedSearch : Muyzer_2011_Stand.Genomic.Sci_4_23

PubMedID: 21475584

Gene_locus related to this paper: thish-b8gp07 , thish-b8gpt7 , thish-b8gs68 , thish-b8gu24 , thish-b8guj8 , thish-b8gqw0

Title : Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242) - Stein_2011_J.Bacteriol_193_2668

Author(s) : Stein LY , Bringel F , DiSpirito AA , Han S , Jetten MS , Kalyuzhnaya MG , Kits KD , Klotz MG , Op den Camp HJ , Semrau JD , Vuilleumier S , Bruce DC , Cheng JF , Davenport KW , Goodwin L , Hauser L , Lajus A , Land ML , Lapidus A , Lucas S , Medigue C , Pitluck S , Woyke T

Ref : Journal of Bacteriology , 193 :2668 , 2011

Abstract : Stein_2011_J.Bacteriol_193_2668

ESTHER : Stein_2011_J.Bacteriol_193_2668

PubMedSearch : Stein_2011_J.Bacteriol_193_2668

PubMedID: 21441518

Gene_locus related to this paper: 9rhiz-e8ky64 , 9rhiz-e8l0f5 , 9rhiz-e8l1r9 , 9rhiz-e8l2p9 , 9rhiz-e8l5j3 , 9rhiz-e8l733

Title : Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus - Blumer-Schuette_2011_J.Bacteriol_193_1483

Author(s) : Blumer-Schuette SE , Ozdemir I , Mistry D , Lucas S , Lapidus A , Cheng JF , Goodwin LA , Pitluck S , Land ML , Hauser LJ , Woyke T , Mikhailova N , Pati A , Kyrpides NC , Ivanova N , Detter JC , Walston-Davenport K , Han S , Adams MW , Kelly RM

Ref : Journal of Bacteriology , 193 :1483 , 2011

Abstract : Blumer-Schuette_2011_J.Bacteriol_193_1483

ESTHER : Blumer-Schuette_2011_J.Bacteriol_193_1483

PubMedSearch : Blumer-Schuette_2011_J.Bacteriol_193_1483

PubMedID: 21216991

Gene_locus related to this paper: calki-e4s634 , calh1-e4q772

Title : Comparative genomics of xylose-fermenting fungi for enhanced biofuel production - Wohlbach_2011_Proc.Natl.Acad.Sci.U.S.A_108_13212

Author(s) : Wohlbach DJ , Kuo A , Sato TK , Potts KM , Salamov AA , LaButti KM , Sun H , Clum A , Pangilinan JL , Lindquist EA , Lucas S , Lapidus A , Jin M , Gunawan C , Balan V , Dale BE , Jeffries TW , Zinkel R , Barry KW , Grigoriev IV , Gasch AP

Ref : Proc Natl Acad Sci U S A , 108 :13212 , 2011

Abstract : Wohlbach_2011_Proc.Natl.Acad.Sci.U.S.A_108_13212

ESTHER : Wohlbach_2011_Proc.Natl.Acad.Sci.U.S.A_108_13212

PubMedSearch : Wohlbach_2011_Proc.Natl.Acad.Sci.U.S.A_108_13212

PubMedID: 21788494

Gene_locus related to this paper: cantc-g3b3r0 , spapn-g3ap60 , spapn-g3aif9 , cantc-g3axw7

Title : Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems - van Passel_2011_J.Bacteriol_193_2367

Author(s) : van Passel MW , Kant R , Palva A , Copeland A , Lucas S , Lapidus A , Glavina Del Rio T , Pitluck S , Goltsman E , Clum A , Sun H , Schmutz J , Larimer FW , Land ML , Hauser L , Kyrpides N , Mikhailova N , Richardson PP , Janssen PH , de Vos WM , Smidt H

Ref : Journal of Bacteriology , 193 :2367 , 2011

Abstract : van Passel_2011_J.Bacteriol_193_2367

ESTHER : van Passel_2011_J.Bacteriol_193_2367

PubMedSearch : van Passel_2011_J.Bacteriol_193_2367

PubMedID: 21398538

Gene_locus related to this paper: opitp-b1zrm2

Title : Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010 - Klenk_2011_Stand.Genomic.Sci_5_121

Author(s) : Klenk HP , Lapidus A , Chertkov O , Copeland A , Del Rio TG , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Han C , Bruce D , Goodwin L , Pitluck S , Pati A , Ivanova N , Mavromatis K , Daum C , Chen A , Palaniappan K , Chang YJ , Land M , Hauser L , Jeffries CD , Detter JC , Rohde M , Abt B , Pukall R , Goker M , Bristow J , Markowitz V , Hugenholtz P , Eisen JA

Ref : Stand Genomic Sci , 5 :121 , 2011

Abstract : Klenk_2011_Stand.Genomic.Sci_5_121

ESTHER : Klenk_2011_Stand.Genomic.Sci_5_121

PubMedSearch : Klenk_2011_Stand.Genomic.Sci_5_121

PubMedID: 22180816

Title : Complete genome sequence of Weeksella virosa type strain (9751) - Lang_2011_Stand.Genomic.Sci_4_81

Author(s) : Lang E , Teshima H , Lucas S , Lapidus A , Hammon N , Deshpande S , Nolan M , Cheng JF , Pitluck S , Liolios K , Pagani I , Mikhailova N , Ivanova N , Mavromatis K , Pati A , Tapia R , Han C , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla EM , Kopitz M , Rohde M , Goker M , Tindall BJ , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 4 :81 , 2011

Abstract : Lang_2011_Stand.Genomic.Sci_4_81

ESTHER : Lang_2011_Stand.Genomic.Sci_4_81

PubMedSearch : Lang_2011_Stand.Genomic.Sci_4_81

PubMedID: 21475590

Gene_locus related to this paper: weevc-f0nz59 , weevc-f0p0t6 , weevc-f0p2m6 , weevc-f0p272 , weevc-f0nzv7 , weevc-f0p2m3

Title : Complete genome sequence of Haliscomenobacter hydrossis type strain (O) - Daligault_2011_Stand.Genomic.Sci_4_352

Author(s) : Daligault H , Lapidus A , Zeytun A , Nolan M , Lucas S , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Pagani I , Ivanova N , Huntemann M , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Brambilla EM , Rohde M , Verbarg S , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T

Ref : Stand Genomic Sci , 4 :352 , 2011

Abstract : Daligault_2011_Stand.Genomic.Sci_4_352

ESTHER : Daligault_2011_Stand.Genomic.Sci_4_352

PubMedSearch : Daligault_2011_Stand.Genomic.Sci_4_352

PubMedID: 21886862

Gene_locus related to this paper: halh1-f4kq83 , halh1-f4kt82 , halh1-f4l3j3 , halh1-f4krm2 , halh1-f4kqu5 , halh1-f4l2w7

Title : Complete genome sequence of Truepera radiovictrix type strain (RQ-24) - Ivanova_2011_Stand.Genomic.Sci_4_91

Author(s) : Ivanova N , Rohde C , Munk C , Nolan M , Lucas S , Del Rio TG , Tice H , Deshpande S , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla E , Rohde M , Goker M , Tindall BJ , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 4 :91 , 2011

Abstract : Ivanova_2011_Stand.Genomic.Sci_4_91

ESTHER : Ivanova_2011_Stand.Genomic.Sci_4_91

PubMedSearch : Ivanova_2011_Stand.Genomic.Sci_4_91

PubMedID: 21475591

Gene_locus related to this paper: trurr-d7cxw6

Title : Complete genome sequence of Oceanithermus profundus type strain (506) - Pati_2011_Stand.Genomic.Sci_4_210

Author(s) : Pati A , Zhang X , Lapidus A , Nolan M , Lucas S , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Hauser L , Jeffries CD , Brambilla EM , Rohl A , Mwirichia R , Rohde M , Tindall BJ , Sikorski J , Wirth R , Goker M , Woyke T , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Land M

Ref : Stand Genomic Sci , 4 :210 , 2011

Abstract : Pati_2011_Stand.Genomic.Sci_4_210

ESTHER : Pati_2011_Stand.Genomic.Sci_4_210

PubMedSearch : Pati_2011_Stand.Genomic.Sci_4_210

PubMedID: 21677858

Gene_locus related to this paper: ocep5-e4u9z9 , ocep5-e4u767

Title : Complete genome sequence of Tsukamurella paurometabola type strain (no. 33) - Munk_2011_Stand.Genomic.Sci_4_342

Author(s) : Munk AC , Lapidus A , Lucas S , Nolan M , Tice H , Cheng JF , Del Rio TG , Goodwin L , Pitluck S , Liolios K , Huntemann M , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Tapia R , Han C , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Yasawong M , Brambilla EM , Rohde M , Sikorski J , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 4 :342 , 2011

Abstract : Munk_2011_Stand.Genomic.Sci_4_342

ESTHER : Munk_2011_Stand.Genomic.Sci_4_342

PubMedSearch : Munk_2011_Stand.Genomic.Sci_4_342

PubMedID: 21886861

Gene_locus related to this paper: tsupd-d5uxc3

Title : Complete genome sequence of Paludibacter propionicigenes type strain (WB4) - Gronow_2011_Stand.Genomic.Sci_4_36

Author(s) : Gronow S , Munk C , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla E , Rohde M , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 4 :36 , 2011

Abstract : Gronow_2011_Stand.Genomic.Sci_4_36

ESTHER : Gronow_2011_Stand.Genomic.Sci_4_36

PubMedSearch : Gronow_2011_Stand.Genomic.Sci_4_36

PubMedID: 21475585

Gene_locus related to this paper: palpw-e4t0i0 , palpw-e4t5j4 , palpw-e4t287 , palpw-e4t2d5 , palpw-e4t2d6 , palpw-e4t5h4

Title : Complete genome sequence of Bacteroides helcogenes type strain (P 36-108) - Pati_2011_Stand.Genomic.Sci_4_45

Author(s) : Pati A , Gronow S , Zeytun A , Lapidus A , Nolan M , Hammon N , Deshpande S , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brambilla E , Rohde M , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lucas S

Ref : Stand Genomic Sci , 4 :45 , 2011

Abstract : Pati_2011_Stand.Genomic.Sci_4_45

ESTHER : Pati_2011_Stand.Genomic.Sci_4_45

PubMedSearch : Pati_2011_Stand.Genomic.Sci_4_45

PubMedID: 21475586

Gene_locus related to this paper: bact6-e6sny5 , bact6-e6sqv4 , bact6-e6str2 , bact6-e6suh8 , bact6-e6suk4 , bact6-e6sn75

Title : Complete genome sequence of Desulfobulbus propionicus type strain (1pr3) - Pagani_2011_Stand.Genomic.Sci_4_100

Author(s) : Pagani I , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Chertkov O , Davenport K , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Mavromatis K , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brambilla E , Kannan KP , Djao OD , Rohde M , Pukall R , Spring S , Goker M , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 4 :100 , 2011

Abstract : Pagani_2011_Stand.Genomic.Sci_4_100

ESTHER : Pagani_2011_Stand.Genomic.Sci_4_100

PubMedSearch : Pagani_2011_Stand.Genomic.Sci_4_100

PubMedID: 21475592

Gene_locus related to this paper: despd-e8rdj0 , despd-e8rjl1

Title : Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)) - Kiss_2011_Stand.Genomic.Sci_5_356

Author(s) : Kiss H , Nett M , Domin N , Martin K , Maresca JA , Copeland A , Lapidus A , Lucas S , Berry KW , Glavina Del Rio T , Dalin E , Tice H , Pitluck S , Richardson P , Bruce D , Goodwin L , Han C , Detter JC , Schmutz J , Brettin T , Land M , Hauser L , Kyrpides NC , Ivanova N , Goker M , Woyke T , Klenk HP , Bryant DA

Ref : Stand Genomic Sci , 5 :356 , 2011

Abstract : Kiss_2011_Stand.Genomic.Sci_5_356

ESTHER : Kiss_2011_Stand.Genomic.Sci_5_356

PubMedSearch : Kiss_2011_Stand.Genomic.Sci_5_356

PubMedID: 22675585

Gene_locus related to this paper: hera2-a9b061

Title : Complete genome sequence of Cellulophaga algicola type strain (IC166) - Abt_2011_Stand.Genomic.Sci_4_72

Author(s) : Abt B , Lu M , Misra M , Han C , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin L , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Ovchinikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brambilla E , Rohde M , Tindall BJ , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 4 :72 , 2011

Abstract : Abt_2011_Stand.Genomic.Sci_4_72

ESTHER : Abt_2011_Stand.Genomic.Sci_4_72

PubMedSearch : Abt_2011_Stand.Genomic.Sci_4_72

PubMedID: 21475589

Gene_locus related to this paper: celad-e6x4e5 , celad-e6x420 , celad-e6x777 , celad-e6xbe7

Title : The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri - Frese_2011_PLoS.Genet_7_e1001314

Author(s) : Frese SA , Benson AK , Tannock GW , Loach DM , Kim J , Zhang M , Oh PL , Heng NC , Patil PB , Juge N , Mackenzie DA , Pearson BM , Lapidus A , Dalin E , Tice H , Goltsman E , Land M , Hauser L , Ivanova N , Kyrpides NC , Walter J

Ref : PLoS Genet , 7 :e1001314 , 2011

Abstract : Frese_2011_PLoS.Genet_7_e1001314

ESTHER : Frese_2011_PLoS.Genet_7_e1001314

PubMedSearch : Frese_2011_PLoS.Genet_7_e1001314

PubMedID: 21379339

Gene_locus related to this paper: lacre-b3xl60 , lacrj-b2g622 , lacre-a0a0s4nmr3

Title : Complete genome sequence of Cellulophaga lytica type strain (LIM-21) - Pati_2011_Stand.Genomic.Sci_4_221

Author(s) : Pati A , Abt B , Teshima H , Nolan M , Lapidus A , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Pagani I , Mavromatis K , Ovchinikova G , Chen A , Palaniappan K , Land M , Hauser L , Jeffries CD , Detter JC , Brambilla EM , Kannan KP , Rohde M , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Ivanova N

Ref : Stand Genomic Sci , 4 :221 , 2011

Abstract : Pati_2011_Stand.Genomic.Sci_4_221

ESTHER : Pati_2011_Stand.Genomic.Sci_4_221

PubMedSearch : Pati_2011_Stand.Genomic.Sci_4_221

PubMedID: 21677859

Gene_locus related to this paper: cellc-f0re62 , cellc-f0rek7 , cellc-f0rf75 , cellc-f0rgt2

Title : Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7 - Suen_2011_J.Bacteriol_193_5574

Author(s) : Suen G , Stevenson DM , Bruce DC , Chertkov O , Copeland A , Cheng JF , Detter C , Detter JC , Goodwin LA , Han CS , Hauser LJ , Ivanova NN , Kyrpides NC , Land ML , Lapidus A , Lucas S , Ovchinnikova G , Pitluck S , Tapia R , Woyke T , Boyum J , Mead D , Weimer PJ

Ref : Journal of Bacteriology , 193 :5574 , 2011

Abstract : Suen_2011_J.Bacteriol_193_5574

ESTHER : Suen_2011_J.Bacteriol_193_5574

PubMedSearch : Suen_2011_J.Bacteriol_193_5574

PubMedID: 21914885

Gene_locus related to this paper: ruma7-e6ujm0 , ruma7-e6ukm6 , rumal-a0a011v2q8 , ruma7-e6ukb2

Title : Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139) - Land_2011_Stand.Genomic.Sci_4_233

Author(s) : Land M , Held B , Gronow S , Abt B , Lucas S , Del Rio TG , Nolan M , Tice H , Cheng JF , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Tapia R , Han C , Goodwin L , Chen A , Palaniappan K , Hauser L , Brambilla EM , Rohde M , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 4 :233 , 2011

Abstract : Land_2011_Stand.Genomic.Sci_4_233

ESTHER : Land_2011_Stand.Genomic.Sci_4_233

PubMedSearch : Land_2011_Stand.Genomic.Sci_4_233

PubMedID: 21677860

Gene_locus related to this paper: 9bace-f3zpr3 , 9bace-f3zre7

Title : Complete genome sequence of Mahella australiensis type strain (50-1 BON) - Sikorski_2011_Stand.Genomic.Sci_4_331

Author(s) : Sikorski J , Teshima H , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Pitluck S , Liolios K , Pagani I , Ivanova N , Huntemann M , Mavromatis K , Ovchinikova G , Pati A , Tapia R , Han C , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Ngatchou-Djao OD , Rohde M , Pukall R , Spring S , Abt B , Goker M , Detter JC , Woyke T , Bristow J , Markowitz V , Hugenholtz P , Eisen JA , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 4 :331 , 2011

Abstract : Sikorski_2011_Stand.Genomic.Sci_4_331

ESTHER : Sikorski_2011_Stand.Genomic.Sci_4_331

PubMedSearch : Sikorski_2011_Stand.Genomic.Sci_4_331

PubMedID: 21886860

Gene_locus related to this paper: maha5-f3zvv5

Title : Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus - Tang_2011_BMC.Genomics_12_334

Author(s) : Tang KH , Barry K , Chertkov O , Dalin E , Han CS , Hauser LJ , Honchak BM , Karbach LE , Land ML , Lapidus A , Larimer FW , Mikhailova N , Pitluck S , Pierson BK , Blankenship RE

Ref : BMC Genomics , 12 :334 , 2011

Abstract : Tang_2011_BMC.Genomics_12_334

ESTHER : Tang_2011_BMC.Genomics_12_334

PubMedSearch : Tang_2011_BMC.Genomics_12_334

PubMedID: 21714912

Gene_locus related to this paper: chlaa-a9we32

Title : Complete genome sequence of Intrasporangium calvum type strain (7 KIP) - Del Rio_2010_Stand.Genomic.Sci_3_294

Author(s) : Del Rio TG , Chertkov O , Yasawong M , Lucas S , Deshpande S , Cheng JF , Detter C , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Pukall R , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 3 :294 , 2010

Abstract : Del Rio_2010_Stand.Genomic.Sci_3_294

ESTHER : Del Rio_2010_Stand.Genomic.Sci_3_294

PubMedSearch : Del Rio_2010_Stand.Genomic.Sci_3_294

PubMedID: 21304734

Gene_locus related to this paper: intc7-e6s7p7 , intc7-e6s9d8 , intc7-e6sds3 , intc7-e6s7a1 , intc7-e6sc55

Title : Complete genome sequence of Streptosporangium roseum type strain (NI 9100) - Nolan_2010_Stand.Genomic.Sci_2_29

Author(s) : Nolan M , Sikorski J , Jando M , Lucas S , Lapidus A , Glavina Del Rio T , Chen F , Tice H , Pitluck S , Cheng JF , Chertkov O , Sims D , Meincke L , Brettin T , Han C , Detter JC , Bruce D , Goodwin L , Land M , Hauser L , Chang YJ , Jeffries CD , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 2 :29 , 2010

Abstract : Nolan_2010_Stand.Genomic.Sci_2_29

ESTHER : Nolan_2010_Stand.Genomic.Sci_2_29

PubMedSearch : Nolan_2010_Stand.Genomic.Sci_2_29

PubMedID: 21304675

Gene_locus related to this paper: strrd-d2aqk6 , strrd-d2aqt5 , strrd-d2ar22 , strrd-d2ar75 , strrd-d2arp5 , strrd-d2auf6 , strrd-d2aw37 , strrd-d2awh0 , strrd-d2awp2 , strrd-d2axt7 , strrd-d2ayh4 , strrd-d2ayq3 , strrd-d2ayx8 , strrd-d2az98 , strrd-d2b0g2 , strrd-d2b0t3 , strrd-d2b0u2 , strrd-d2b0u6 , strrd-d2b0w5 , strrd-d2b2m3 , strrd-d2b2r7 , strrd-d2b3g9 , strrd-d2b3i2 , strrd-d2b3i7 , strrd-d2b4f5 , strrd-d2b4y4 , strrd-d2b4z9 , strrd-d2b5z6 , strrd-d2b6v8 , strrd-d2b6y3 , strrd-d2b7a9 , strrd-d2b7h6 , strrd-d2b9k5 , strrd-d2b9n9 , strrd-d2b152 , strrd-d2b235 , strrd-d2b519 , strrd-d2b540 , strrd-d2b638 , strrd-d2b812 , strrd-d2ba59 , strrd-d2bae6 , strrd-d2bai2 , strrd-d2bbp7 , strrd-d2bc04 , strrd-d2bc32 , strrd-d2bc93 , strrd-d2bd97 , strrd-d2bdh0 , strrd-d2bdh1 , strrd-d2bdl4 , strrd-d2bdq5 , strrd-d2bdt5 , strrd-d2bdv3 , strrd-d2be60 , strrd-d2be88 , strrd-d2bf33 , strrd-d2bf77 , strrd-d2b7c2 , strrd-d2awc2 , strrd-d2as88 , strrd-d2aw56 , strrd-d2b3r3 , strrd-d2bf75 , strrd-d2b2d4 , strrd-d2b1i6

Title : Complete genome sequence of Arcanobacterium haemolyticum type strain (11018) - Yasawong_2010_Stand.Genomic.Sci_3_126

Author(s) : Yasawong M , Teshima H , Lapidus A , Nolan M , Lucas S , Glavina Del Rio T , Tice H , Cheng JF , Bruce D , Detter C , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Sikorski J , Pukall R , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 3 :126 , 2010

Abstract : Yasawong_2010_Stand.Genomic.Sci_3_126

ESTHER : Yasawong_2010_Stand.Genomic.Sci_3_126

PubMedSearch : Yasawong_2010_Stand.Genomic.Sci_3_126

PubMedID: 21304742

Gene_locus related to this paper: archd-d7bl98 , archd-d7bm52 , archd-d7bne1 , archd-d7bkh7

Title : Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228) - Mavromatis_2010_Stand.Genomic.Sci_3_136

Author(s) : Mavromatis K , Yasawong M , Chertkov O , Lapidus A , Lucas S , Nolan M , Del Rio TG , Tice H , Cheng JF , Pitluck S , Liolios K , Ivanova N , Tapia R , Han C , Bruce D , Goodwin L , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Rohde M , Brambilla E , Spring S , Goker M , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 3 :136 , 2010

Abstract : Mavromatis_2010_Stand.Genomic.Sci_3_136

ESTHER : Mavromatis_2010_Stand.Genomic.Sci_3_136

PubMedSearch : Mavromatis_2010_Stand.Genomic.Sci_3_136

PubMedID: 21304743

Gene_locus related to this paper: spiss-e1r584 , spiss-e1rce8

Title : Complete genome sequence of Acidaminococcus fermentans type strain (VR4) - Chang_2010_Stand.Genomic.Sci_3_1

Author(s) : Chang YJ , Pukall R , Saunders E , Lapidus A , Copeland A , Nolan M , Glavina Del Rio T , Lucas S , Chen F , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Goodwin L , Pitluck S , Mikhailova N , Liolios K , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Jeffries CD , Brettin T , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 3 :1 , 2010

Abstract : Chang_2010_Stand.Genomic.Sci_3_1

ESTHER : Chang_2010_Stand.Genomic.Sci_3_1

PubMedSearch : Chang_2010_Stand.Genomic.Sci_3_1

PubMedID: 21304687

Gene_locus related to this paper: acifv-d2rju3 , acifv-d2rk38 , acifv-d2rmp3

Title : Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1) - Kiss_2010_Stand.Genomic.Sci_3_153

Author(s) : Kiss H , Cleland D , Lapidus A , Lucas S , Del Rio TG , Nolan M , Tice H , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Lu M , Brettin T , Detter JC , Goker M , Tindall BJ , Beck B , McDermott TR , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Cheng JF

Ref : Stand Genomic Sci , 3 :153 , 2010

Abstract : Kiss_2010_Stand.Genomic.Sci_3_153

ESTHER : Kiss_2010_Stand.Genomic.Sci_3_153

PubMedSearch : Kiss_2010_Stand.Genomic.Sci_3_153

PubMedID: 21304745

Gene_locus related to this paper: thet1-d1cbe2 , thet1-d1cbh1 , thet1-d1cbh5 , thet1-d1cdw7 , thet1-d1cej0 , thet1-d1cfr4 , thet1-d1chv7 , thet1-d1cih9

Title : Complete genome sequence of Arcobacter nitrofigilis type strain (CI) - Pati_2010_Stand.Genomic.Sci_2_300

Author(s) : Pati A , Gronow S , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Chertkov O , Bruce D , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 2 :300 , 2010

Abstract : Pati_2010_Stand.Genomic.Sci_2_300

ESTHER : Pati_2010_Stand.Genomic.Sci_2_300

PubMedSearch : Pati_2010_Stand.Genomic.Sci_2_300

PubMedID: 21304714

Gene_locus related to this paper: arcnc-d5v0e6 , arcnc-d5v643

Title : Complete genome sequence of Meiothermus ruber type strain (21) - Tindall_2010_Stand.Genomic.Sci_3_26

Author(s) : Tindall BJ , Sikorski J , Lucas S , Goltsman E , Copeland A , Glavina Del Rio T , Nolan M , Tice H , Cheng JF , Han C , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Fahnrich R , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 3 :26 , 2010

Abstract : Tindall_2010_Stand.Genomic.Sci_3_26

ESTHER : Tindall_2010_Stand.Genomic.Sci_3_26

PubMedSearch : Tindall_2010_Stand.Genomic.Sci_3_26

PubMedID: 21304689

Gene_locus related to this paper: meird-d3pkm5 , meird-d3pnp5 , meird-d3pnr1 , meird-d3pnw2 , meird-d3pq15 , meird-d3pqm5 , meird-d3ps60

Title : Complete genome sequence of Meiothermus silvanus type strain (VI-R2) - Sikorski_2010_Stand.Genomic.Sci_3_37

Author(s) : Sikorski J , Tindall BJ , Lowry S , Lucas S , Nolan M , Copeland A , Glavina Del Rio T , Tice H , Cheng JF , Han C , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 3 :37 , 2010

Abstract : Sikorski_2010_Stand.Genomic.Sci_3_37

ESTHER : Sikorski_2010_Stand.Genomic.Sci_3_37

PubMedSearch : Sikorski_2010_Stand.Genomic.Sci_3_37

PubMedID: 21304690

Gene_locus related to this paper: meisd-d7bbz4 , meisd-d7bbu2 , meisd-d7bjh0 , meisd-d7bez6 , meisd-d7bfp6

Title : Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)) - Spring_2010_Stand.Genomic.Sci_2_38

Author(s) : Spring S , Nolan M , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Land M , Chen F , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Hauser L , Chang YJ , Jeffries CD , Munk C , Kiss H , Chain P , Han C , Brettin T , Detter JC , Schuler E , Goker M , Rohde M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 2 :38 , 2010

Abstract : Spring_2010_Stand.Genomic.Sci_2_38

ESTHER : Spring_2010_Stand.Genomic.Sci_2_38

PubMedSearch : Spring_2010_Stand.Genomic.Sci_2_38

PubMedID: 21304676

Gene_locus related to this paper: sphtd-d1c5v2

Title : Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034) - Glavina_2010_Stand.Genomic.Sci_2_87

Author(s) : Glavina Del Rio T , Abt B , Spring S , Lapidus A , Nolan M , Tice H , Copeland A , Cheng JF , Chen F , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Saunders E , Detter JC , Brettin T , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lucas S

Ref : Stand Genomic Sci , 2 :87 , 2010

Abstract : Glavina_2010_Stand.Genomic.Sci_2_87

ESTHER : Glavina_2010_Stand.Genomic.Sci_2_87

PubMedSearch : Glavina_2010_Stand.Genomic.Sci_2_87

PubMedID: 21304681

Gene_locus related to this paper: chipd-c7pkc8

Title : Complete genome sequence of Segniliparus rotundus type strain (CDC 1076) - Sikorski_2010_Stand.Genomic.Sci_2_203

Author(s) : Sikorski J , Lapidus A , Copeland A , Misra M , Glavina Del Rio T , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Jando M , Schneider S , Bruce D , Goodwin L , Pitluck S , Liolios K , Mikhailova N , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Chertkov O , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Detter JC , Han C , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 2 :203 , 2010

Abstract : Sikorski_2010_Stand.Genomic.Sci_2_203

ESTHER : Sikorski_2010_Stand.Genomic.Sci_2_203

PubMedSearch : Sikorski_2010_Stand.Genomic.Sci_2_203

PubMedID: 21304703

Gene_locus related to this paper: segrd-d6z8m1 , segrd-d6z8p5 , segrd-d6z9l9 , segrd-d6za06 , segrd-d6zaa6 , segrd-d6zav0 , segrd-d6zbl4 , segrd-d6zbs4 , segrd-d6zc43 , segrd-d6zca1 , segrd-d6zcn6 , segrd-d6zdf7 , segrd-d6zds6 , segrd-d6zdt4 , segrd-d6zdz3 , segrd-d6zed7 , segrd-d6zej1 , segrd-d6zfg4 , segrd-d6zfr6 , segrd-d6za90 , segrd-d6za91 , segrd-d6zd15 , segrd-d6zcg9 , segrd-d6zb77

Title : The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader - Lykidis_2010_PLoS.One_5_e9729

Author(s) : Lykidis A , Perez-Pantoja D , Ledger T , Mavromatis K , Anderson IJ , Ivanova NN , Hooper SD , Lapidus A , Lucas S , Gonzalez B , Kyrpides NC

Ref : PLoS ONE , 5 :e9729 , 2010

Abstract : Lykidis_2010_PLoS.One_5_e9729

ESTHER : Lykidis_2010_PLoS.One_5_e9729

PubMedSearch : Lykidis_2010_PLoS.One_5_e9729

PubMedID: 20339589

Gene_locus related to this paper: cupnj-hboh

Title : Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300) - Harmon-Smith_2010_Stand.Genomic.Sci_2_220

Author(s) : Harmon-Smith M , Celia L , Chertkov O , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Goodwin L , Pitluck S , Pati A , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Goker M , Beck B , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Chen F

Ref : Stand Genomic Sci , 2 :220 , 2010

Abstract : Harmon-Smith_2010_Stand.Genomic.Sci_2_220

ESTHER : Harmon-Smith_2010_Stand.Genomic.Sci_2_220

PubMedSearch : Harmon-Smith_2010_Stand.Genomic.Sci_2_220

PubMedID: 21304705

Gene_locus related to this paper: sebte-d1am65

Title : Complete genome sequence of Thermocrinis albus type strain (HI 11\/12) - Wirth_2010_Stand.Genomic.Sci_2_194

Author(s) : Wirth R , Sikorski J , Brambilla E , Misra M , Lapidus A , Copeland A , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Han C , Detter JC , Tapia R , Bruce D , Goodwin L , Pitluck S , Pati A , Anderson I , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Bilek Y , Hader T , Land M , Hauser L , Chang YJ , Jeffries CD , Tindall BJ , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 2 :194 , 2010

Abstract : Wirth_2010_Stand.Genomic.Sci_2_194

ESTHER : Wirth_2010_Stand.Genomic.Sci_2_194

PubMedSearch : Wirth_2010_Stand.Genomic.Sci_2_194

PubMedID: 21304702

Gene_locus related to this paper: theah-d3smz6

Title : Complete genome sequence of Thermosphaera aggregans type strain (M11TL) - Spring_2010_Stand.Genomic.Sci_2_245

Author(s) : Spring S , Rachel R , Lapidus A , Davenport K , Tice H , Copeland A , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CC , Brettin T , Detter JC , Tapia R , Han C , Heimerl T , Weikl F , Brambilla E , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 2 :245 , 2010

Abstract : Spring_2010_Stand.Genomic.Sci_2_245

ESTHER : Spring_2010_Stand.Genomic.Sci_2_245

PubMedSearch : Spring_2010_Stand.Genomic.Sci_2_245

PubMedID: 21304709

Gene_locus related to this paper: theam-d5u0z4

Title : Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288) - Sikorski_2010_Stand.Genomic.Sci_3_57

Author(s) : Sikorski J , Lapidus A , Chertkov O , Lucas S , Copeland A , Glavina Del Rio T , Nolan M , Tice H , Cheng JF , Han C , Brambilla E , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Bruce D , Detter C , Tapia R , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Spring S , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 3 :57 , 2010

Abstract : Sikorski_2010_Stand.Genomic.Sci_3_57

ESTHER : Sikorski_2010_Stand.Genomic.Sci_3_57

PubMedSearch : Sikorski_2010_Stand.Genomic.Sci_3_57

PubMedID: 21304692

Gene_locus related to this paper: aceaz-d9qsg6 , aceaz-d9qqr0

Title : Complete genome sequence of Gordonia bronchialis type strain (3410) - Ivanova_2010_Stand.Genomic.Sci_2_19

Author(s) : Ivanova N , Sikorski J , Jando M , Lapidus A , Nolan M , Lucas S , Del Rio TG , Tice H , Copeland A , Cheng JF , Chen F , Bruce D , Goodwin L , Pitluck S , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Saunders E , Han C , Detter JC , Brettin T , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 2 :19 , 2010

Abstract : Ivanova_2010_Stand.Genomic.Sci_2_19

ESTHER : Ivanova_2010_Stand.Genomic.Sci_2_19

PubMedSearch : Ivanova_2010_Stand.Genomic.Sci_2_19

PubMedID: 21304674

Gene_locus related to this paper: gorb4-d0lfd8

Title : Complete genome sequence of the photosynthetic purple nonsulfur bacterium Rhodobacter capsulatus SB 1003 - Strnad_2010_J.Bacteriol_192_3545

Author(s) : Strnad H , Lapidus A , Paces J , Ulbrich P , Vlcek C , Paces V , Haselkorn R

Ref : Journal of Bacteriology , 192 :3545 , 2010

Abstract : Strnad_2010_J.Bacteriol_192_3545

ESTHER : Strnad_2010_J.Bacteriol_192_3545

PubMedSearch : Strnad_2010_J.Bacteriol_192_3545

PubMedID: 20418398

Gene_locus related to this paper: achxa-e3hx77 , rhoca-bchO , rhoca-PHAC , rhocb-d5akf6 , rhocb-d5ap20 , rhocb-d5al14 , rhocb-d5alc0 , rhocb-d5arh6

Title : Complete genome sequence of Brachyspira murdochii type strain (56-150) - Pati_2010_Stand.Genomic.Sci_2_260

Author(s) : Pati A , Sikorski J , Gronow S , Munk C , Lapidus A , Copeland A , Glavina Del Tio T , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Spring S , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 2 :260 , 2010

Abstract : Pati_2010_Stand.Genomic.Sci_2_260

ESTHER : Pati_2010_Stand.Genomic.Sci_2_260

PubMedSearch : Pati_2010_Stand.Genomic.Sci_2_260

PubMedID: 21304710

Gene_locus related to this paper: bram5-d5u3y5 , bram5-d5u7a7 , bram5-d5u9f8 , bram5-d5ua75 , bram5-d5u886

Title : Complete genome sequence of Conexibacter woesei type strain (ID131577) - Pukall_2010_Stand.Genomic.Sci_2_212

Author(s) : Pukall R , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Mavromatis K , Ivanova N , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Meincke L , Sims D , Brettin T , Detter JC , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Kyrpides NC , Klenk HP , Hugenholtz P

Ref : Stand Genomic Sci , 2 :212 , 2010

Abstract : Pukall_2010_Stand.Genomic.Sci_2_212

ESTHER : Pukall_2010_Stand.Genomic.Sci_2_212

PubMedSearch : Pukall_2010_Stand.Genomic.Sci_2_212

PubMedID: 21304704

Gene_locus related to this paper: conwi-d3fc89

Title : Complete genome sequence of Methanothermus fervidus type strain (V24S) - Anderson_2010_Stand.Genomic.Sci_3_315

Author(s) : Anderson I , Djao OD , Misra M , Chertkov O , Nolan M , Lucas S , Lapidus A , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Brambilla E , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Sikorski J , Spring S , Rohde M , Eichinger K , Huber H , Wirth R , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 3 :315 , 2010

Abstract : Anderson_2010_Stand.Genomic.Sci_3_315

ESTHER : Anderson_2010_Stand.Genomic.Sci_3_315

PubMedSearch : Anderson_2010_Stand.Genomic.Sci_3_315

PubMedID: 21304736

Title : Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847) - Brambilla_2010_Stand.Genomic.Sci_3_203

Author(s) : Brambilla E , Djao OD , Daligault H , Lapidus A , Lucas S , Hammon N , Nolan M , Tice H , Cheng JF , Han C , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Spring S , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 3 :203 , 2010

Abstract : Brambilla_2010_Stand.Genomic.Sci_3_203

ESTHER : Brambilla_2010_Stand.Genomic.Sci_3_203

PubMedSearch : Brambilla_2010_Stand.Genomic.Sci_3_203

PubMedID: 21304750

Gene_locus related to this paper: metp4-e1rj85 , metp4-e1rk92 , metp4-e1ree0

Title : Complete genome sequence of Aminobacterium colombiense type strain (ALA-1) - Chertkov_2010_Stand.Genomic.Sci_2_280

Author(s) : Chertkov O , Sikorski J , Brambilla E , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Spring S , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 2 :280 , 2010

Abstract : Chertkov_2010_Stand.Genomic.Sci_2_280

ESTHER : Chertkov_2010_Stand.Genomic.Sci_2_280

PubMedSearch : Chertkov_2010_Stand.Genomic.Sci_2_280

PubMedID: 21304712

Title : Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07) - Foster_2010_Stand.Genomic.Sci_2_1

Author(s) : Foster B , Pukall R , Abt B , Nolan M , Glavina Del Rio T , Chen F , Lucas S , Tice H , Pitluck S , Cheng JF , Chertkov O , Brettin T , Han C , Detter JC , Bruce D , Goodwin L , Ivanova N , Mavromatis K , Pati A , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 2 :1 , 2010

Abstract : Foster_2010_Stand.Genomic.Sci_2_1

ESTHER : Foster_2010_Stand.Genomic.Sci_2_1

PubMedSearch : Foster_2010_Stand.Genomic.Sci_2_1

PubMedID: 21304672

Title : Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1) - Goker_2010_Stand.Genomic.Sci_3_66

Author(s) : Goker M , Held B , Lapidus A , Nolan M , Spring S , Yasawong M , Lucas S , Glavina Del Rio T , Tice H , Cheng JF , Goodwin L , Tapia R , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Brambilla E , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Detter JC , Han C , Rohde M , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 3 :66 , 2010

Abstract : Goker_2010_Stand.Genomic.Sci_3_66

ESTHER : Goker_2010_Stand.Genomic.Sci_3_66

PubMedSearch : Goker_2010_Stand.Genomic.Sci_3_66

PubMedID: 21304693

Title : Complete genome sequence of Vulcanisaeta distributa type strain (IC-017) - Mavromatis_2010_Stand.Genomic.Sci_3_117

Author(s) : Mavromatis K , Sikorski J , Pabst E , Teshima H , Lapidus A , Lucas S , Nolan M , Glavina Del Rio T , Cheng JF , Bruce D , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Spring S , Goker M , Wirth R , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 3 :117 , 2010

Abstract : Mavromatis_2010_Stand.Genomic.Sci_3_117

ESTHER : Mavromatis_2010_Stand.Genomic.Sci_3_117

PubMedSearch : Mavromatis_2010_Stand.Genomic.Sci_3_117

PubMedID: 21304741

Gene_locus related to this paper: vuldi-e1qt20 , vuldi-e1qqi6

Title : Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA) - Mavromatis_2010_Stand.Genomic.Sci_2_9

Author(s) : Mavromatis K , Sikorski J , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Meincke L , Sims D , Chertkov O , Han C , Brettin T , Detter JC , Wahrenburg C , Rohde M , Pukall R , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 2 :9 , 2010

Abstract : Mavromatis_2010_Stand.Genomic.Sci_2_9

ESTHER : Mavromatis_2010_Stand.Genomic.Sci_2_9

PubMedSearch : Mavromatis_2010_Stand.Genomic.Sci_2_9

PubMedID: 21304673

Title : Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460) - Kiss_2010_Stand.Genomic.Sci_2_270

Author(s) : Kiss H , Lang E , Lapidus A , Copeland A , Nolan M , Glavina Del Rio T , Chen F , Lucas S , Tice H , Cheng JF , Han C , Goodwin L , Pitluck S , Liolios K , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brettin T , Spring S , Rohde M , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 2 :270 , 2010

Abstract : Kiss_2010_Stand.Genomic.Sci_2_270

ESTHER : Kiss_2010_Stand.Genomic.Sci_2_270

PubMedSearch : Kiss_2010_Stand.Genomic.Sci_2_270

PubMedID: 21304711

Gene_locus related to this paper: dena2-d4h2g2 , dena2-d4h260

Title : Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022) - Pati_2010_Stand.Genomic.Sci_2_49

Author(s) : Pati A , LaButti K , Pukall R , Nolan M , Glavina Del Rio T , Tice H , Cheng JF , Lucas S , Chen F , Copeland A , Ivanova N , Mavromatis K , Mikhailova N , Pitluck S , Bruce D , Goodwin L , Land M , Hauser L , Chang YJ , Jeffries CD , Chen A , Palaniappan K , Chain P , Brettin T , Sikorski J , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 2 :49 , 2010

Abstract : Pati_2010_Stand.Genomic.Sci_2_49

ESTHER : Pati_2010_Stand.Genomic.Sci_2_49

PubMedSearch : Pati_2010_Stand.Genomic.Sci_2_49

PubMedID: 21304677

Title : Genome sequence of the obligate methanotroph Methylosinus trichosporium strain OB3b - Stein_2010_J.Bacteriol_192_6497

Author(s) : Stein LY , Yoon S , Semrau JD , DiSpirito AA , Crombie A , Murrell JC , Vuilleumier S , Kalyuzhnaya MG , Op den Camp HJ , Bringel F , Bruce D , Cheng JF , Copeland A , Goodwin L , Han S , Hauser L , Jetten MS , Lajus A , Land ML , Lapidus A , Lucas S , Medigue C , Pitluck S , Woyke T , Zeytun A , Klotz MG

Ref : Journal of Bacteriology , 192 :6497 , 2010

Abstract : Stein_2010_J.Bacteriol_192_6497

ESTHER : Stein_2010_J.Bacteriol_192_6497

PubMedSearch : Stein_2010_J.Bacteriol_192_6497

PubMedID: 20952571

Gene_locus related to this paper: mettr-d5qk82 , mettr-d5qqb3 , mettr-d5qrl9

Title : Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509) - Sun_2010_Stand.Genomic.Sci_3_325

Author(s) : Sun H , Lapidus A , Nolan M , Lucas S , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Djao OD , Rohde M , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 3 :325 , 2010

Abstract : Sun_2010_Stand.Genomic.Sci_3_325

ESTHER : Sun_2010_Stand.Genomic.Sci_3_325

PubMedSearch : Sun_2010_Stand.Genomic.Sci_3_325

PubMedID: 21304737

Gene_locus related to this paper: nocdd-d7auf1 , nocdd-d7avl6 , nocdd-d7b2j7 , nocdd-d7b3b3 , nocdd-d7b6l9 , nocdd-d7b210 , nocdd-d7b279 , nocdd-d7b3k0 , nocdd-d7awb2

Title : Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419 - Reeve_2010_Stand.Genomic.Sci_2_77

Author(s) : Reeve W , Chain P , O'Hara G , Ardley J , Nandesena K , Brau L , Tiwari R , Malfatti S , Kiss H , Lapidus A , Copeland A , Nolan M , Land M , Hauser L , Chang YJ , Ivanova N , Mavromatis K , Markowitz V , Kyrpides N , Gollagher M , Yates R , Dilworth M , Howieson J

Ref : Stand Genomic Sci , 2 :77 , 2010

Abstract : Reeve_2010_Stand.Genomic.Sci_2_77

ESTHER : Reeve_2010_Stand.Genomic.Sci_2_77

PubMedSearch : Reeve_2010_Stand.Genomic.Sci_2_77

PubMedID: 21304680

Title : Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1) - Sikorski_2010_Stand.Genomic.Sci_3_304

Author(s) : Sikorski J , Chertkov O , Lapidus A , Nolan M , Lucas S , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla E , Yasawong M , Rohde M , Pukall R , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 3 :304 , 2010

Abstract : Sikorski_2010_Stand.Genomic.Sci_3_304

ESTHER : Sikorski_2010_Stand.Genomic.Sci_3_304

PubMedSearch : Sikorski_2010_Stand.Genomic.Sci_3_304

PubMedID: 21304735

Title : Complete genome sequence of Archaeoglobus profundus type strain (AV18) - von Jan_2010_Stand.Genomic.Sci_2_327

Author(s) : von Jan M , Lapidus A , Del Rio TG , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Goodwin L , Han C , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Chertkov O , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Saunders E , Brettin T , Detter JC , Chain P , Eichinger K , Huber H , Spring S , Rohde M , Goker M , Wirth R , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 2 :327 , 2010

Abstract : von Jan_2010_Stand.Genomic.Sci_2_327

ESTHER : von Jan_2010_Stand.Genomic.Sci_2_327

PubMedSearch : von Jan_2010_Stand.Genomic.Sci_2_327

PubMedID: 21304717

Title : Complete genome sequence of Desulfarculus baarsii type strain (2st14) - Sun_2010_Stand.Genomic.Sci_3_276

Author(s) : Sun H , Spring S , Lapidus A , Davenport K , Del Rio TG , Tice H , Nolan M , Copeland A , Cheng JF , Lucas S , Tapia R , Goodwin L , Pitluck S , Ivanova N , Pagani I , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Hauser L , Chang YJ , Jeffries CD , Detter JC , Han C , Rohde M , Brambilla E , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Land M

Ref : Stand Genomic Sci , 3 :276 , 2010

Abstract : Sun_2010_Stand.Genomic.Sci_3_276

ESTHER : Sun_2010_Stand.Genomic.Sci_3_276

PubMedSearch : Sun_2010_Stand.Genomic.Sci_3_276

PubMedID: 21304732

Gene_locus related to this paper: desb2-e1qfv0 , desb2-e1qiq4 , desb2-e1qd85

Title : Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium - Young_2010_J.Bacteriol_192_841

Author(s) : Young M , Artsatbanov V , Beller HR , Chandra G , Chater KF , Dover LG , Goh EB , Kahan T , Kaprelyants AS , Kyrpides N , Lapidus A , Lowry SR , Lykidis A , Mahillon J , Markowitz V , Mavromatis K , Mukamolova GV , Oren A , Rokem JS , Smith MC , Young DI , Greenblatt CL

Ref : Journal of Bacteriology , 192 :841 , 2010

Abstract : Young_2010_J.Bacteriol_192_841

ESTHER : Young_2010_J.Bacteriol_192_841

PubMedSearch : Young_2010_J.Bacteriol_192_841

PubMedID: 19948807

Gene_locus related to this paper: miclc-c5cbn3

Title : Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207) - Labutti_2010_Stand.Genomic.Sci_3_85

Author(s) : LaButti K , Mayilraj S , Clum A , Lucas S , Glavina Del Rio T , Nolan M , Tice H , Cheng JF , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 3 :85 , 2010

Abstract : Labutti_2010_Stand.Genomic.Sci_3_85

ESTHER : Labutti_2010_Stand.Genomic.Sci_3_85

PubMedSearch : Labutti_2010_Stand.Genomic.Sci_3_85

PubMedID: 21304695

Title : Complete genome sequence of Sulfurimonas autotrophica type strain (OK10) - Sikorski_2010_Stand.Genomic.Sci_3_194

Author(s) : Sikorski J , Munk C , Lapidus A , Ngatchou Djao OD , Lucas S , Glavina Del Rio T , Nolan M , Tice H , Han C , Cheng JF , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Sims D , Meincke L , Brettin T , Detter JC , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Lang E , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 3 :194 , 2010

Abstract : Sikorski_2010_Stand.Genomic.Sci_3_194

ESTHER : Sikorski_2010_Stand.Genomic.Sci_3_194

PubMedSearch : Sikorski_2010_Stand.Genomic.Sci_3_194

PubMedID: 21304749

Gene_locus related to this paper: sulao-e0up24 , sulao-e0ute6 , sulao-metxa

Title : Complete genome sequence of Haliangium ochraceum type strain (SMP-2) - Ivanova_2010_Stand.Genomic.Sci_2_96

Author(s) : Ivanova N , Daum C , Lang E , Abt B , Kopitz M , Saunders E , Lapidus A , Lucas S , Glavina Del Rio T , Nolan M , Tice H , Copeland A , Cheng JF , Chen F , Bruce D , Goodwin L , Pitluck S , Mavromatis K , Pati A , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brettin T , Rohde M , Goker M , Bristow J , Markowitz V , Eisen JA , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 2 :96 , 2010

Abstract : Ivanova_2010_Stand.Genomic.Sci_2_96

ESTHER : Ivanova_2010_Stand.Genomic.Sci_2_96

PubMedSearch : Ivanova_2010_Stand.Genomic.Sci_2_96

PubMedID: 21304682

Gene_locus related to this paper: halo1-d0lid9 , halo1-d0lm49 , halo1-d0lrn3 , halo1-d0ljm2

Title : Complete genome sequence of Planctomyces limnophilus type strain (Mu 290) - Labutti_2010_Stand.Genomic.Sci_3_47

Author(s) : LaButti K , Sikorski J , Schneider S , Nolan M , Lucas S , Glavina Del Rio T , Tice H , Cheng JF , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Tindall BJ , Rohde M , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 3 :47 , 2010

Abstract : Labutti_2010_Stand.Genomic.Sci_3_47

ESTHER : Labutti_2010_Stand.Genomic.Sci_3_47

PubMedSearch : Labutti_2010_Stand.Genomic.Sci_3_47

PubMedID: 21304691

Gene_locus related to this paper: plal2-d5spy8 , plal2-d5ssg7 , plal2-d5ssq1 , plal2-d5stl8 , plal2-d5su74 , plal2-d5swy9 , plal2-d5sxa1 , plal2-d5sxi9 , plal2-d5swp5

Title : Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24) - Mavromatis_2010_Stand.Genomic.Sci_2_290

Author(s) : Mavromatis K , Abt B , Brambilla E , Lapidus A , Copeland A , Deshpande S , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Detter JC , Woyke T , Goodwin L , Pitluck S , Held B , Brettin T , Tapia R , Ivanova N , Mikhailova N , Pati A , Liolios K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 2 :290 , 2010

Abstract : Mavromatis_2010_Stand.Genomic.Sci_2_290

ESTHER : Mavromatis_2010_Stand.Genomic.Sci_2_290

PubMedSearch : Mavromatis_2010_Stand.Genomic.Sci_2_290

PubMedID: 21304713

Gene_locus related to this paper: corad-d5ehl2 , corad-d5ene2 , corad-d5epb6 , corad-d5epc2 , corad-d5epz5

Title : Complete genome sequence of Haloterrigena turkmenica type strain (4k) - Saunders_2010_Stand.Genomic.Sci_2_107

Author(s) : Saunders E , Tindall BJ , Fahnrich R , Lapidus A , Copeland A , Del Rio TG , Lucas S , Chen F , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Goodwin L , Chain P , Pitluck S , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 2 :107 , 2010

Abstract : Saunders_2010_Stand.Genomic.Sci_2_107

ESTHER : Saunders_2010_Stand.Genomic.Sci_2_107

PubMedSearch : Saunders_2010_Stand.Genomic.Sci_2_107

PubMedID: 21304683

Gene_locus related to this paper: halsp-YUXL , haltv-d2rs70 , haltv-d2rtx9 , haltv-d2rwf4 , haltv-d2rwl5 , haltv-d2rxg6 , haltv-d2rxv9 , haltv-d2ry22 , haltv-d2rzg9 , haltv-d2rzl4 , haltv-d2s3c9

Title : Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1) - Djao_2010_Stand.Genomic.Sci_3_268

Author(s) : Djao OD , Zhang X , Lucas S , Lapidus A , Del Rio TG , Nolan M , Tice H , Cheng JF , Han C , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Ovchinnikova G , Pati A , Brambilla E , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Sikorski J , Spring S , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 3 :268 , 2010

Abstract : Djao_2010_Stand.Genomic.Sci_3_268

ESTHER : Djao_2010_Stand.Genomic.Sci_3_268

PubMedSearch : Djao_2010_Stand.Genomic.Sci_3_268

PubMedID: 21304731

Gene_locus related to this paper: synlt-d7cpg4

Title : Complete genome sequence of Cellulomonas flavigena type strain (134) - Abt_2010_Stand.Genomic.Sci_3_15

Author(s) : Abt B , Foster B , Lapidus A , Clum A , Sun H , Pukall R , Lucas S , Glavina Del Rio T , Nolan M , Tice H , Cheng JF , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 3 :15 , 2010

Abstract : Abt_2010_Stand.Genomic.Sci_3_15

ESTHER : Abt_2010_Stand.Genomic.Sci_3_15

PubMedSearch : Abt_2010_Stand.Genomic.Sci_3_15

PubMedID: 21304688

Gene_locus related to this paper: celfn-d5uif8 , celfn-d5uil9 , celfn-d5ukl6 , celfn-d5ulu1 , celfn-d5ulp3 , celfn-d5ul75 , celfn-d5ufu5 , celfn-d5ugh8

Title : Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3) - Pitluck_2010_Stand.Genomic.Sci_3_285

Author(s) : Pitluck S , Yasawong M , Held B , Lapidus A , Nolan M , Copeland A , Lucas S , Del Rio TG , Tice H , Cheng JF , Chertkov O , Goodwin L , Tapia R , Han C , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Pukall R , Spring S , Rohde M , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 3 :285 , 2010

Abstract : Pitluck_2010_Stand.Genomic.Sci_3_285

ESTHER : Pitluck_2010_Stand.Genomic.Sci_3_285

PubMedSearch : Pitluck_2010_Stand.Genomic.Sci_3_285

PubMedID: 21304733

Gene_locus related to this paper: 9bact-e3cyn3

Title : Complete genome sequence of Thermaerobacter marianensis type strain (7p75a) - Han_2010_Stand.Genomic.Sci_3_337

Author(s) : Han C , Gu W , Zhang X , Lapidus A , Nolan M , Copeland A , Lucas S , Del Rio TG , Tice H , Cheng JF , Tapia R , Goodwin L , Pitluck S , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Schneider S , Rohde M , Goker M , Pukall R , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Detter JC

Ref : Stand Genomic Sci , 3 :337 , 2010

Abstract : Han_2010_Stand.Genomic.Sci_3_337

ESTHER : Han_2010_Stand.Genomic.Sci_3_337

PubMedSearch : Han_2010_Stand.Genomic.Sci_3_337

PubMedID: 21304738

Gene_locus related to this paper: them7-e6sh68 , them7-e6shq4 , them7-e6shv1

Title : Complete genome sequence of Olsenella uli type strain (VPI D76D-27C) - Goker_2010_Stand.Genomic.Sci_3_76

Author(s) : Goker M , Held B , Lucas S , Nolan M , Yasawong M , Glavina Del Rio T , Tice H , Cheng JF , Bruce D , Detter JC , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Sikorski J , Pukall R , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 3 :76 , 2010

Abstract : Goker_2010_Stand.Genomic.Sci_3_76

ESTHER : Goker_2010_Stand.Genomic.Sci_3_76

PubMedSearch : Goker_2010_Stand.Genomic.Sci_3_76

PubMedID: 21304694

Gene_locus related to this paper: olsuv-e1qw86 , olsuv-e1qw87 , olsuv-e1qz20 , olsuv-e1qwd9

Title : Complete genome sequence of Ferrimonas balearica type strain (PAT) - Nolan_2010_Stand.Genomic.Sci_3_174

Author(s) : Nolan M , Sikorski J , Davenport K , Lucas S , Del Rio TG , Tice H , Cheng JF , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Tapia R , Brettin T , Detter JC , Han C , Yasawong M , Rohde M , Tindall BJ , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 3 :174 , 2010

Abstract : Nolan_2010_Stand.Genomic.Sci_3_174

ESTHER : Nolan_2010_Stand.Genomic.Sci_3_174

PubMedSearch : Nolan_2010_Stand.Genomic.Sci_3_174

PubMedID: 21304747

Gene_locus related to this paper: ferbd-e1slj2 , ferbd-e1sm86 , ferbd-e1sm96 , ferbd-e1sr13 , ferbd-e1sv19 , ferbd-e1sva3 , ferbd-e1swh8 , ferbd-e1ss88 , ferbd-e1swm0 , ferbd-e1snp4

Title : Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134) - Pukall_2009_Stand.Genomic.Sci_1_262

Author(s) : Pukall R , Gehrich-Schroter G , Lapidus A , Nolan M , Glavina Del Rio T , Lucas S , Chen F , Tice H , Pitluck S , Cheng JF , Copeland A , Saunders E , Brettin T , Detter JC , Bruce D , Goodwin L , Pati A , Ivanova N , Mavromatis K , Ovchinnikova G , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Han C

Ref : Stand Genomic Sci , 1 :262 , 2009

Abstract : Pukall_2009_Stand.Genomic.Sci_1_262

ESTHER : Pukall_2009_Stand.Genomic.Sci_1_262

PubMedSearch : Pukall_2009_Stand.Genomic.Sci_1_262

PubMedID: 21304666

Gene_locus related to this paper: jondd-c7qz27 , jondd-c7qza6 , jondd-c7r0s6 , jondd-c7r2p4 , jondd-c7r2s4 , jondd-c7r5f7 , jondd-c7r044 , jondd-c7r128 , jondd-c7r357

Title : Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255) - Saunders_2009_Stand.Genomic.Sci_1_174

Author(s) : Saunders E , Pukall R , Abt B , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Meincke L , Sims D , Brettin T , Detter JC , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Han C

Ref : Stand Genomic Sci , 1 :174 , 2009

Abstract : Saunders_2009_Stand.Genomic.Sci_1_174

ESTHER : Saunders_2009_Stand.Genomic.Sci_1_174

PubMedSearch : Saunders_2009_Stand.Genomic.Sci_1_174

PubMedID: 21304654

Gene_locus related to this paper: eggle-c8wmc6 , eggle-c8wpb6

Title : Complete genome sequence of Kangiella koreensis type strain (SW-125) - Han_2009_Stand.Genomic.Sci_1_226

Author(s) : Han C , Sikorski J , Lapidus A , Nolan M , Glavina Del Rio T , Tice H , Cheng JF , Lucas S , Chen F , Copeland A , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Bruce D , Goodwin L , Pitluck S , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Saunders E , Brettin T , Goker M , Tindall BJ , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Detter JC

Ref : Stand Genomic Sci , 1 :226 , 2009

Abstract : Han_2009_Stand.Genomic.Sci_1_226

ESTHER : Han_2009_Stand.Genomic.Sci_1_226

PubMedSearch : Han_2009_Stand.Genomic.Sci_1_226

PubMedID: 21304661

Gene_locus related to this paper: kankd-c7r7f7 , kankd-c7r7w2 , kankd-c7r8t4 , kankd-c7r9y8 , kankd-c7r701 , kankd-c7r727 , kankd-c7r779 , kankd-c7r785 , kankd-c7ra17 , kankd-c7rc78

Title : Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP) - Clum_2009_Stand.Genomic.Sci_1_38

Author(s) : Clum A , Nolan M , Lang E , Glavina Del Rio T , Tice H , Copeland A , Cheng JF , Lucas S , Chen F , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavrommatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Goker M , Spring S , Land M , Hauser L , Chang YJ , Jeffries CC , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 1 :38 , 2009

Abstract : Clum_2009_Stand.Genomic.Sci_1_38

ESTHER : Clum_2009_Stand.Genomic.Sci_1_38

PubMedSearch : Clum_2009_Stand.Genomic.Sci_1_38

PubMedID: 21304635

Gene_locus related to this paper: acifd-c7m0l6 , acifd-c7m0z1 , acifd-c7m1g1 , acifd-c7m1p7

Title : Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21) - Munk_2009_Stand.Genomic.Sci_1_234

Author(s) : Munk C , Lapidus A , Copeland A , Jando M , Mayilraj S , Glavina Del Rio T , Nolan M , Chen F , Lucas S , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Goodwin L , Chain P , Pitluck S , Goker M , Ovchinikova G , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 1 :234 , 2009

Abstract : Munk_2009_Stand.Genomic.Sci_1_234

ESTHER : Munk_2009_Stand.Genomic.Sci_1_234

PubMedSearch : Munk_2009_Stand.Genomic.Sci_1_234

PubMedID: 21304662

Gene_locus related to this paper: stanl-d3pu17 , stanl-d3pum9 , stanl-d3puq6 , stanl-d3pv31 , stanl-d3pve8 , stanl-d3px28 , stanl-d3pxd2 , stanl-d3pxk8 , stanl-d3pxp3 , stanl-d3pxu2 , stanl-d3py25 , stanl-d3py33 , stanl-d3pzi4 , stanl-d3q2d8 , stanl-d3q2s1 , stanl-d3q2z9 , stanl-d3q3r4 , stanl-d3q3u7 , stanl-d3q4g9 , stanl-d3q4i5 , stanl-d3q4i6 , stanl-d3q5k1 , stanl-d3q5x3 , stanl-d3q6b0 , stanl-d3q6y1 , stanl-d3q7h0 , stanl-d3q8a8 , stanl-d3q8h5 , stanl-d3q8k0 , stanl-d3q8m9 , stanl-d3q8q0 , stanl-d3q8y3 , stanl-d3q9n2 , stanl-d3q9n8 , stanl-d3q9v6 , stanl-d3q028 , stanl-d3q293 , stanl-d3q721 , stanl-d3q784 , stanl-d3q912 , stanl-d3q956 , stanl-d3qak3 , stanl-d3qas4 , stanl-d3qb03 , stanl-d3qbc6 , stanl-d3q1i5 , stanl-d3pws8 , stanl-d3py92 , stanl-d3qbx6

Title : Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) - Han_2009_Stand.Genomic.Sci_1_54

Author(s) : Han C , Spring S , Lapidus A , Del Rio TG , Tice H , Copeland A , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CC , Saunders E , Chertkov O , Brettin T , Goker M , Rohde M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Detter JC

Ref : Stand Genomic Sci , 1 :54 , 2009

Abstract : Han_2009_Stand.Genomic.Sci_1_54

ESTHER : Han_2009_Stand.Genomic.Sci_1_54

PubMedSearch : Han_2009_Stand.Genomic.Sci_1_54

PubMedID: 21304637

Gene_locus related to this paper: pedhd-c6xsb2 , pedhd-c6xtc2 , pedhd-c6xtt3 , pedhd-c6xwf3 , pedhd-c6xzk8 , pedhd-c6y3i4 , pedhd-c6y3z2 , pedhd-c6y041 , pedhd-c6y150 , pedhd-c6xze4 , pedhd-c6xze5 , pedhd-c6y111

Title : Complete genome sequence of Atopobium parvulum type strain (IPP 1246) - Copeland_2009_Stand.Genomic.Sci_1_166

Author(s) : Copeland A , Sikorski J , Lapidus A , Nolan M , Del Rio TG , Lucas S , Chen F , Tice H , Pitluck S , Cheng JF , Pukall R , Chertkov O , Brettin T , Han C , Detter JC , Kuske C , Bruce D , Goodwin L , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 1 :166 , 2009

Abstract : Copeland_2009_Stand.Genomic.Sci_1_166

ESTHER : Copeland_2009_Stand.Genomic.Sci_1_166

PubMedSearch : Copeland_2009_Stand.Genomic.Sci_1_166

PubMedID: 21304653

Gene_locus related to this paper: atopd-c8w7b9 , atopd-c8w7c0 , atopd-c8w7k9 , atopd-c8w886

Title : Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122) - Land_2009_Stand.Genomic.Sci_1_21

Author(s) : Land M , Pukall R , Abt B , Goker M , Rohde M , Glavina Del Rio T , Tice H , Copeland A , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Hauser L , Chang YJ , Jefferies CC , Saunders E , Brettin T , Detter JC , Han C , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 1 :21 , 2009

Abstract : Land_2009_Stand.Genomic.Sci_1_21

ESTHER : Land_2009_Stand.Genomic.Sci_1_21

PubMedSearch : Land_2009_Stand.Genomic.Sci_1_21

PubMedID: 21304633

Gene_locus related to this paper: beuc1-c5bux6 , beuc1-c5bve3 , beuc1-c5bvg4 , beuc1-c5bvm8 , beuc1-c5bwz5 , beuc1-c5bx55 , beuc1-c5bxw8 , beuc1-c5bxx8 , beuc1-c5byj2 , beuc1-c5bzt8 , beuc1-c5c0d3 , beuc1-c5c0f9 , beuc1-c5c1b7 , beuc1-c5c4j9 , beuc1-c5c4m3 , beuc1-c5c5h5 , beuc1-c5c5t9 , beuc1-c5c6d1 , beuc1-c5c476 , beuc1-c5c478 , beuc1-c5c572 , beuc1-c5c4i4 , beuc1-c5bxv5

Title : Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10) - Lapidus_2009_Stand.Genomic.Sci_1_3

Author(s) : Lapidus A , Pukall R , Labuttii K , Copeland A , Del Rio TG , Nolan M , Chen F , Lucas S , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Rohde M , Goker M , Pati A , Ivanova N , Mavrommatis K , Chen A , Palaniappan K , D'Haeseleer P , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 1 :3 , 2009

Abstract : Lapidus_2009_Stand.Genomic.Sci_1_3

ESTHER : Lapidus_2009_Stand.Genomic.Sci_1_3

PubMedSearch : Lapidus_2009_Stand.Genomic.Sci_1_3

PubMedID: 21304631

Gene_locus related to this paper: brafd-c7maj6 , brafd-c7mb43 , brafd-c7mc54 , brafd-c7mcf0 , brafd-c7mfs9 , brafd-c7mfx9 , brafd-c7mg22 , brafd-c7mbr0 , brafd-c7mi27 , brafd-c7mhn6

Title : Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b) - Ivanova_2009_Stand.Genomic.Sci_1_126

Author(s) : Ivanova N , Gronow S , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Saunders E , Bruce D , Goodwin L , Brettin T , Detter JC , Han C , Pitluck S , Mikhailova N , Pati A , Mavrommatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Rohde C , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 1 :126 , 2009

Abstract : Ivanova_2009_Stand.Genomic.Sci_1_126

ESTHER : Ivanova_2009_Stand.Genomic.Sci_1_126

PubMedSearch : Ivanova_2009_Stand.Genomic.Sci_1_126

PubMedID: 21304648

Gene_locus related to this paper: lepbd-c7naa9 , lepbd-c7nay1 , lepbd-c7ncm7

Title : Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis - McBride_2009_Appl.Environ.Microbiol_75_6864

Author(s) : McBride MJ , Xie G , Martens EC , Lapidus A , Henrissat B , Rhodes RG , Goltsman E , Wang W , Xu J , Hunnicutt DW , Staroscik AM , Hoover TR , Cheng YQ , Stein JL

Ref : Applied Environmental Microbiology , 75 :6864 , 2009

Abstract : McBride_2009_Appl.Environ.Microbiol_75_6864

ESTHER : McBride_2009_Appl.Environ.Microbiol_75_6864

PubMedSearch : McBride_2009_Appl.Environ.Microbiol_75_6864

PubMedID: 19717629

Gene_locus related to this paper: flaj1-a5fb12 , flaj1-a5fmd7 , flaj1-a5fns3

Title : Complete genome sequence of Actinosynnema mirum type strain (101) - Land_2009_Stand.Genomic.Sci_1_46

Author(s) : Land M , Lapidus A , Mayilraj S , Chen F , Copeland A , Del Rio TG , Nolan M , Lucas S , Tice H , Cheng JF , Chertkov O , Bruce D , Goodwin L , Pitluck S , Rohde M , Goker M , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Hauser L , Chang YJ , Jeffries CC , Brettin T , Detter JC , Han C , Chain P , Tindall BJ , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 1 :46 , 2009

Abstract : Land_2009_Stand.Genomic.Sci_1_46

ESTHER : Land_2009_Stand.Genomic.Sci_1_46

PubMedSearch : Land_2009_Stand.Genomic.Sci_1_46

PubMedID: 21304636

Gene_locus related to this paper: actmd-c6w9l3 , actmd-c6w9n7 , actmd-c6w9s6 , actmd-c6w9w6 , actmd-c6w881 , actmd-c6w899 , actmd-c6waq3 , actmd-c6wbu4 , actmd-c6wc84 , actmd-c6we33 , actmd-c6wed0 , actmd-c6wee7 , actmd-c6weq5 , actmd-c6wer8 , actmd-c6wf96 , actmd-c6wfj7 , actmd-c6wg08 , actmd-c6wgs1 , actmd-c6wh70 , actmd-c6wh84 , actmd-c6whc5 , actmd-c6whm5 , actmd-c6wi63 , actmd-c6wiw2 , actmd-c6wl14 , actmd-c6wla7 , actmd-c6wlp6 , actmd-c6wnr8 , actmd-c6wnv1 , actmd-c6wq55 , actmd-c6wqd1 , actmd-c6wqs5 , actmd-c6wqw5 , actmd-c6wrs4 , actmd-c6ws01 , actmd-c6ws38 , actmd-c6wre6 , actmd-c6wj22 , actmd-c6wmc1 , actmd-c6wn31 , actmd-c6wqv1 , actmd-c6wlx3 , actmd-c6wmy9

Title : Complete genome sequence of Saccharomonospora viridis type strain (P101) - Pati_2009_Stand.Genomic.Sci_1_141

Author(s) : Pati A , Sikorski J , Nolan M , Lapidus A , Copeland A , Glavina Del Rio T , Lucas S , Chen F , Tice H , Pitluck S , Cheng JF , Chertkov O , Brettin T , Han C , Detter JC , Kuske C , Bruce D , Goodwin L , Chain P , D'Haeseleer P , Chen A , Palaniappan K , Ivanova N , Mavromatis K , Mikhailova N , Rohde M , Tindall BJ , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 1 :141 , 2009

Abstract : Pati_2009_Stand.Genomic.Sci_1_141

ESTHER : Pati_2009_Stand.Genomic.Sci_1_141

PubMedSearch : Pati_2009_Stand.Genomic.Sci_1_141

PubMedID: 21304650

Gene_locus related to this paper: sacvd-DsvA , sacvd-c7mpm7 , sacvd-c7mpv6 , sacvd-c7mqn5 , sacvd-c7mrh9 , sacvd-c7mrj7 , sacvd-c7msh1 , sacvd-c7mss4 , sacvd-c7msy5 , sacvd-c7mua8 , sacvd-c7mv20 , sacvd-c7mvm9 , sacvd-c7mx36 , sacvd-c7my02 , sacvd-c7myf1 , sacvd-c7myf2 , sacvd-c7myh3 , sacvd-c7myv3 , sacvd-c7mzb0 , sacvd-c7n0e5 , sacvd-c7mxx2 , sacvd-c7mwe5 , sacvd-c7mve8 , sacvd-c7mu02 , sacvd-c7myq6

Title : Complete genome sequence of Kytococcus sedentarius type strain (541) - Sims_2009_Stand.Genomic.Sci_1_12

Author(s) : Sims D , Brettin T , Detter JC , Han C , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Chen F , Lucas S , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Ovchinnikova G , Pati A , Ivanova N , Mavrommatis K , Chen A , Palaniappan K , D'Haeseleer P , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Schneider S , Goker M , Pukall R , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 1 :12 , 2009

Abstract : Sims_2009_Stand.Genomic.Sci_1_12

ESTHER : Sims_2009_Stand.Genomic.Sci_1_12

PubMedSearch : Sims_2009_Stand.Genomic.Sci_1_12

PubMedID: 21304632

Gene_locus related to this paper: kytsd-c7nfq8 , kytsd-c7nib9 , kytsd-c7niy9 , kytsd-c7nl26 , kytsd-c7nj46 , kytsd-c7nig1

Title : Genomic analysis of Elusimicrobium minutum, the first cultivated representative of the phylum Elusimicrobia (formerly termite group 1) - Herlemann_2009_Appl.Environ.Microbiol_75_2841

Author(s) : Herlemann DP , Geissinger O , Ikeda-Ohtsubo W , Kunin V , Sun H , Lapidus A , Hugenholtz P , Brune A

Ref : Applied Environmental Microbiology , 75 :2841 , 2009

Abstract : Herlemann_2009_Appl.Environ.Microbiol_75_2841

ESTHER : Herlemann_2009_Appl.Environ.Microbiol_75_2841

PubMedSearch : Herlemann_2009_Appl.Environ.Microbiol_75_2841

PubMedID: 19270133

Title : Complete genome sequence of Anaerococcus prevotii type strain (PC1) - Labutti_2009_Stand.Genomic.Sci_1_159

Author(s) : LaButti K , Pukall R , Steenblock K , Glavina Del Rio T , Tice H , Copeland A , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Saunders E , Brettin T , Detter JC , Han C , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 1 :159 , 2009

Abstract : Labutti_2009_Stand.Genomic.Sci_1_159

ESTHER : Labutti_2009_Stand.Genomic.Sci_1_159

PubMedSearch : Labutti_2009_Stand.Genomic.Sci_1_159

PubMedID: 21304652

Gene_locus related to this paper: anapd-c7ri43

Title : Complete genome sequence of Streptobacillus moniliformis type strain (9901) - Nolan_2009_Stand.Genomic.Sci_1_300

Author(s) : Nolan M , Gronow S , Lapidus A , Ivanova N , Copeland A , Lucas S , Del Rio TG , Chen F , Tice H , Pitluck S , Cheng JF , Sims D , Meincke L , Bruce D , Goodwin L , Brettin T , Han C , Detter JC , Ovchinikova G , Pati A , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Sproer C , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Chain P

Ref : Stand Genomic Sci , 1 :300 , 2009

Abstract : Nolan_2009_Stand.Genomic.Sci_1_300

ESTHER : Nolan_2009_Stand.Genomic.Sci_1_300

PubMedSearch : Nolan_2009_Stand.Genomic.Sci_1_300

PubMedID: 21304670

Gene_locus related to this paper: strm9-d1ayq9 , strm9-d1avt1

Title : Complete genome sequence of Pirellula staleyi type strain (ATCC 27377) - Clum_2009_Stand.Genomic.Sci_1_308

Author(s) : Clum A , Tindall BJ , Sikorski J , Ivanova N , Mavrommatis K , Lucas S , Glavina T , Del R , Nolan M , Chen F , Tice H , Pitluck S , Cheng JF , Chertkov O , Brettin T , Han C , Detter JC , Kuske C , Bruce D , Goodwin L , Ovchinikova G , Pati A , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A

Ref : Stand Genomic Sci , 1 :308 , 2009

Abstract : Clum_2009_Stand.Genomic.Sci_1_308

ESTHER : Clum_2009_Stand.Genomic.Sci_1_308

PubMedSearch : Clum_2009_Stand.Genomic.Sci_1_308

PubMedID: 21304671

Gene_locus related to this paper: pirsd-d2qwf7 , pirsd-d2qya4 , pirsd-d2qyh4 , pirsd-d2qyx7 , pirsd-d2r0n7 , pirsd-d2r1w6 , pirsd-d2r2c5 , pirsd-d2r2f7 , pirsd-d2r3w0 , pirsd-d2r4c3 , pirsd-d2r5t1 , pirsd-d2r9d5 , pirsd-d2r496 , pirsd-d2r881 , pirsd-d2r024

Title : Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides - McMurdie_2009_PLoS.Genet_5_e1000714

Author(s) : McMurdie PJ , Behrens SF , Muller JA , Goke J , Ritalahti KM , Wagner R , Goltsman E , Lapidus A , Holmes S , Loffler FE , Spormann AM

Ref : PLoS Genet , 5 :e1000714 , 2009

Abstract : McMurdie_2009_PLoS.Genet_5_e1000714

ESTHER : McMurdie_2009_PLoS.Genet_5_e1000714

PubMedSearch : McMurdie_2009_PLoS.Genet_5_e1000714

PubMedID: 19893622

Gene_locus related to this paper: dehm1-q3z8f3 , dehmv-d2bg80

Title : Complete genome sequence of Methanocorpusculum labreanum type strain Z - Anderson_2009_Stand.Genomic.Sci_1_197

Author(s) : Anderson IJ , Sieprawska-Lupa M , Goltsman E , Lapidus A , Copeland A , Glavina Del Rio T , Tice H , Dalin E , Barry K , Pitluck S , Hauser L , Land M , Lucas S , Richardson P , Whitman WB , Kyrpides NC

Ref : Stand Genomic Sci , 1 :197 , 2009

Abstract : Anderson_2009_Stand.Genomic.Sci_1_197

ESTHER : Anderson_2009_Stand.Genomic.Sci_1_197

PubMedSearch : Anderson_2009_Stand.Genomic.Sci_1_197

PubMedID: 21304657

Gene_locus related to this paper: metlz-a2sqw3 , metlz-a2su60 , metlz-a2su61 , metlz-a2su62

Title : Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845) - Mavrommatis_2009_Stand.Genomic.Sci_1_101

Author(s) : Mavrommatis K , Gronow S , Saunders E , Land M , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Pati A , Ivanova N , Chen A , Palaniappan K , Chain P , Hauser L , Chang YJ , Jeffries CD , Brettin T , Detter JC , Han C , Bristow J , Goker M , Rohde M , Eisen JA , Markowitz V , Kyrpides NC , Klenk HP , Hugenholtz P

Ref : Stand Genomic Sci , 1 :101 , 2009

Abstract : Mavrommatis_2009_Stand.Genomic.Sci_1_101

ESTHER : Mavrommatis_2009_Stand.Genomic.Sci_1_101

PubMedSearch : Mavrommatis_2009_Stand.Genomic.Sci_1_101

PubMedID: 21304645

Gene_locus related to this paper: capgi-c2m6q0 , capod-c7m434 , capod-c7m7m0 , capod-c7m8e1 , capod-c7m590 , capoc-e4mus7

Title : Complete genome sequence of Catenulispora acidiphila type strain (ID 139908) - Copeland_2009_Stand.Genomic.Sci_1_119

Author(s) : Copeland A , Lapidus A , Glavina Del Rio T , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Mikhailova N , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Chain P , Land M , Hauser L , Chang YJ , Jeffries CD , Chertkov O , Brettin T , Detter JC , Han C , Ali Z , Tindall BJ , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 1 :119 , 2009

Abstract : Copeland_2009_Stand.Genomic.Sci_1_119

ESTHER : Copeland_2009_Stand.Genomic.Sci_1_119

PubMedSearch : Copeland_2009_Stand.Genomic.Sci_1_119

PubMedID: 21304647

Gene_locus related to this paper: catad-c7pvc2 , catad-c7pvf9 , catad-c7pwm0 , catad-c7pwp0 , catad-c7pws9 , catad-c7pxh4 , catad-c7py99 , catad-c7pyw2 , catad-c7pz32 , catad-c7pz91 , catad-c7pze9 , catad-c7pzn0 , catad-c7q0c0 , catad-c7q0r2 , catad-c7q1d2 , catad-c7q1l8 , catad-c7q3r3 , catad-c7q3t4 , catad-c7q4e4 , catad-c7q5v1 , catad-c7q6u5 , catad-c7q6u8 , catad-c7q7m3 , catad-c7q7s8 , catad-c7q8l0 , catad-c7q8u5 , catad-c7q8y2 , catad-c7q9c0 , catad-c7q209 , catad-c7q740 , catad-c7q940 , catad-c7q983 , catad-c7qam3 , catad-c7qam5 , catad-c7qam7 , catad-c7qat2 , catad-c7qav4 , catad-c7qc64 , catad-c7qdc4 , catad-c7qds2 , catad-c7qdv2 , catad-c7qe72 , catad-c7qed5 , catad-c7qfj4 , catad-c7qfu6 , catad-c7qg26 , catad-c7qgn7 , catad-c7qh87 , catad-c7qh95 , catad-c7qi49 , catad-c7qi50 , catad-c7qib3 , catad-c7qju9 , catad-c7q631 , catad-c7pzc9 , catad-c7pw02 , catad-c7pvj4 , catad-c7q6w1 , catad-c7q7k2 , catad-c7q329

Title : Complete genome sequence of Dyadobacter fermentans type strain (NS114) - Lang_2009_Stand.Genomic.Sci_1_133

Author(s) : Lang E , Lapidus A , Chertkov O , Brettin T , Detter JC , Han C , Copeland A , Glavina Del Rio T , Nolan M , Chen F , Lucas S , Tice H , Cheng JF , Land M , Hauser L , Chang YJ , Jeffries CD , Kopitz M , Bruce D , Goodwin L , Pitluck S , Ovchinnikova G , Pati A , Ivanova N , Mavrommatis K , Chen A , Palaniappan K , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Goker M , Rohde M , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 1 :133 , 2009

Abstract : Lang_2009_Stand.Genomic.Sci_1_133

ESTHER : Lang_2009_Stand.Genomic.Sci_1_133

PubMedSearch : Lang_2009_Stand.Genomic.Sci_1_133

PubMedID: 21304649

Gene_locus related to this paper: dyafd-c6vtl2 , dyafd-c6vtn9 , dyafd-c6vuf1 , dyafd-c6vv37 , dyafd-c6vw49 , dyafd-c6vx42 , dyafd-c6vx54 , dyafd-c6vx95 , dyafd-c6vy00 , dyafd-c6vy01 , dyafd-c6vy05 , dyafd-c6vy98 , dyafd-c6vyc2 , dyafd-c6vyy9 , dyafd-c6vz95 , dyafd-c6vz96 , dyafd-c6w0j7 , dyafd-c6w1q5 , dyafd-c6w3h8 , dyafd-c6w4r6 , dyafd-c6w5n0 , dyafd-c6w5s2 , dyafd-c6w6a8 , dyafd-c6w6k0 , dyafd-c6w6z4 , dyafd-c6w7f1 , dyafd-c6w7i5 , dyafd-c6w325 , dyafd-c6w605 , dyafd-c6w743 , dyafd-c6w773 , dyafd-c6vux0 , dyafd-c6vux5 , dyafd-c6w724 , dyafd-c6w248

Title : Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575) - Spring_2009_Stand.Genomic.Sci_1_242

Author(s) : Spring S , Lapidus A , Schroder M , Gleim D , Sims D , Meincke L , Glavina Del Rio T , Tice H , Copeland A , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Saunders E , Brettin T , Detter JC , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Han C

Ref : Stand Genomic Sci , 1 :242 , 2009

Abstract : Spring_2009_Stand.Genomic.Sci_1_242

ESTHER : Spring_2009_Stand.Genomic.Sci_1_242

PubMedSearch : Spring_2009_Stand.Genomic.Sci_1_242

PubMedID: 21304664

Gene_locus related to this paper: desas-c8vw82 , desas-c8vxd2

Title : Complete genome sequence of Desulfomicrobium baculatum type strain (X) - Copeland_2009_Stand.Genomic.Sci_1_29

Author(s) : Copeland A , Spring S , Goker M , Schneider S , Lapidus A , Del Rio TG , Tice H , Cheng JF , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavrommatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CC , Meincke L , Sims D , Brettin T , Detter JC , Han C , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lucas S

Ref : Stand Genomic Sci , 1 :29 , 2009

Abstract : Copeland_2009_Stand.Genomic.Sci_1_29

ESTHER : Copeland_2009_Stand.Genomic.Sci_1_29

PubMedSearch : Copeland_2009_Stand.Genomic.Sci_1_29

PubMedID: 21304634

Gene_locus related to this paper: desbd-c7ln23 , desbd-c7lrc0 , desbd-c7lw38 , desbd-c7ls17

Title : Complete genome sequence of Halomicrobium mukohataei type strain (arg-2) - Tindall_2009_Stand.Genomic.Sci_1_270

Author(s) : Tindall BJ , Schneider S , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Saunders E , Bruce D , Goodwin L , Pitluck S , Mikhailova N , Pati A , Ivanova N , Mavrommatis K , Chen A , Palaniappan K , Chain P , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Han C , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC , Detter JC

Ref : Stand Genomic Sci , 1 :270 , 2009

Abstract : Tindall_2009_Stand.Genomic.Sci_1_270

ESTHER : Tindall_2009_Stand.Genomic.Sci_1_270

PubMedSearch : Tindall_2009_Stand.Genomic.Sci_1_270

PubMedID: 21304667

Gene_locus related to this paper: halmd-c7nwe5 , halmd-c7nwh2 , halmd-c7p0c0 , halmd-c7p2d1 , halmd-c7p3m9

Title : Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii - Mavromatis_2009_PLoS.One_4_e4192

Author(s) : Mavromatis K , Ivanova N , Anderson I , Lykidis A , Hooper SD , Sun H , Kunin V , Lapidus A , Hugenholtz P , Patel B , Kyrpides NC

Ref : PLoS ONE , 4 :e4192 , 2009

Abstract : Mavromatis_2009_PLoS.One_4_e4192

ESTHER : Mavromatis_2009_PLoS.One_4_e4192

PubMedSearch : Mavromatis_2009_PLoS.One_4_e4192

PubMedID: 19145256

Gene_locus related to this paper: haloh-b8cwa6 , haloh-b8czv0

Title : The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota - Anderson_2009_BMC.Genomics_10_145

Author(s) : Anderson IJ , Dharmarajan L , Rodriguez J , Hooper S , Porat I , Ulrich LE , Elkins JG , Mavromatis K , Sun H , Land M , Lapidus A , Lucas S , Barry K , Huber H , Zhulin IB , Whitman WB , Mukhopadhyay B , Woese C , Bristow J , Kyrpides N

Ref : BMC Genomics , 10 :145 , 2009

Abstract : Anderson_2009_BMC.Genomics_10_145

ESTHER : Anderson_2009_BMC.Genomics_10_145

PubMedSearch : Anderson_2009_BMC.Genomics_10_145

PubMedID: 19341479

Title : Complete genome sequence of Halorhabdus utahensis type strain (AX-2) - Anderson_2009_Stand.Genomic.Sci_1_218

Author(s) : Anderson I , Tindall BJ , Pomrenke H , Goker M , Lapidus A , Nolan M , Copeland A , Glavina Del Rio T , Chen F , Tice H , Cheng JF , Lucas S , Chertkov O , Bruce D , Brettin T , Detter JC , Han C , Goodwin L , Land M , Hauser L , Chang YJ , Jeffries CD , Pitluck S , Pati A , Mavromatis K , Ivanova N , Ovchinnikova G , Chen A , Palaniappan K , Chain P , Rohde M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP

Ref : Stand Genomic Sci , 1 :218 , 2009

Abstract : Anderson_2009_Stand.Genomic.Sci_1_218

ESTHER : Anderson_2009_Stand.Genomic.Sci_1_218

PubMedSearch : Anderson_2009_Stand.Genomic.Sci_1_218

PubMedID: 21304660

Gene_locus related to this paper: halud-c7npq6 , halud-c7npw0 , halud-c7nsl4 , halud-c7nut6 , halud-c7npw2

Title : Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1 - Anderson_2009_Stand.Genomic.Sci_1_189

Author(s) : Anderson IJ , Sieprawska-Lupa M , Lapidus A , Nolan M , Copeland A , Glavina Del Rio T , Tice H , Dalin E , Barry K , Saunders E , Han C , Brettin T , Detter JC , Bruce D , Mikhailova N , Pitluck S , Hauser L , Land M , Lucas S , Richardson P , Whitman WB , Kyrpides NC

Ref : Stand Genomic Sci , 1 :189 , 2009

Abstract : Anderson_2009_Stand.Genomic.Sci_1_189

ESTHER : Anderson_2009_Stand.Genomic.Sci_1_189

PubMedSearch : Anderson_2009_Stand.Genomic.Sci_1_189

PubMedID: 21304656

Title : Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1 - Anderson_2009_Stand.Genomic.Sci_1_183

Author(s) : Anderson IJ , Sun H , Lapidus A , Copeland A , Glavina Del Rio T , Tice H , Dalin E , Lucas S , Barry K , Land M , Richardson P , Huber H , Kyrpides NC

Ref : Stand Genomic Sci , 1 :183 , 2009

Abstract : Anderson_2009_Stand.Genomic.Sci_1_183

ESTHER : Anderson_2009_Stand.Genomic.Sci_1_183

PubMedSearch : Anderson_2009_Stand.Genomic.Sci_1_183

PubMedID: 21304655

Title : Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1) - Pukall_2009_Stand.Genomic.Sci_1_234

Author(s) : Pukall R , Lapidus A , Nolan M , Copeland A , Glavina Del Rio T , Lucas S , Chen F , Tice H , Cheng JF , Chertkov O , Bruce D , Goodwin L , Kuske C , Brettin T , Detter JC , Han C , Pitluck S , Pati A , Mavrommatis K , Ivanova N , Ovchinnikova G , Chen A , Palaniappan K , Schneider S , Rohde M , Chain P , D'Haeseleer P , Goker M , Bristow J , Eisen JA , Markowitz V , Kyrpides NC , Klenk HP , Hugenholtz P

Ref : Stand Genomic Sci , 1 :234 , 2009

Abstract : Pukall_2009_Stand.Genomic.Sci_1_234

ESTHER : Pukall_2009_Stand.Genomic.Sci_1_234

PubMedSearch : Pukall_2009_Stand.Genomic.Sci_1_234

PubMedID: 21304663

Gene_locus related to this paper: slahd-c7n2q9 , slahd-c7n5g8 , slahd-c7n8d3 , slahd-c7n116 , slahd-c7n1y7 , slahd-c7n5i5 , slahd-c7n6x8 , slahd-c7n8a4 , slahd-c7n2t9

Title : The genomic basis of trophic strategy in marine bacteria - Lauro_2009_Proc.Natl.Acad.Sci.U.S.A_106_15527

Author(s) : Lauro FM , McDougald D , Thomas T , Williams TJ , Egan S , Rice S , DeMaere MZ , Ting L , Ertan H , Johnson J , Ferriera S , Lapidus A , Anderson I , Kyrpides N , Munk AC , Detter C , Han CS , Brown MV , Robb FT , Kjelleberg S , Cavicchioli R

Ref : Proc Natl Acad Sci U S A , 106 :15527 , 2009

Abstract : Lauro_2009_Proc.Natl.Acad.Sci.U.S.A_106_15527

ESTHER : Lauro_2009_Proc.Natl.Acad.Sci.U.S.A_106_15527

PubMedSearch : Lauro_2009_Proc.Natl.Acad.Sci.U.S.A_106_15527

PubMedID: 19805210

Gene_locus related to this paper: phoas-q1zm99 , phoas-q1zpt1 , phoas-q1zwh7 , phoas-q1zx01 , phoas-q1zlj9 , sphal-q1grs6

Title : Complete genome sequence of Rhodothermus marinus type strain (R-10) - Nolan_2009_Stand.Genomic.Sci_1_283

Author(s) : Nolan M , Tindall BJ , Pomrenke H , Lapidus A , Copeland A , Glavina Del Rio T , Lucas S , Chen F , Tice H , Cheng JF , Saunders E , Han C , Bruce D , Goodwin L , Chain P , Pitluck S , Ovchinikova G , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Detter JC

Ref : Stand Genomic Sci , 1 :283 , 2009

Abstract : Nolan_2009_Stand.Genomic.Sci_1_283

ESTHER : Nolan_2009_Stand.Genomic.Sci_1_283

PubMedSearch : Nolan_2009_Stand.Genomic.Sci_1_283

PubMedID: 21304669

Gene_locus related to this paper: rhom4-d0mhy8 , rhom4-d0mg25 , rhom4-d0mhd2 , rhom4-d0mhw6

Title : Complete genome sequence of Sanguibacter keddieii type strain (ST-74) - Ivanova_2009_Stand.Genomic.Sci_1_110

Author(s) : Ivanova N , Sikorski J , Sims D , Brettin T , Detter JC , Han C , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Chen F , Lucas S , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Pati A , Mavromatis K , Chen A , Palaniappan K , D'Haeseleer P , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Goker M , Pukall R , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 1 :110 , 2009

Abstract : Ivanova_2009_Stand.Genomic.Sci_1_110

ESTHER : Ivanova_2009_Stand.Genomic.Sci_1_110

PubMedSearch : Ivanova_2009_Stand.Genomic.Sci_1_110

PubMedID: 21304646

Gene_locus related to this paper: sanks-d1bag5 , sanks-d1bah5 , sanks-d1bah6 , sanks-d1bat1 , sanks-d1bay1 , sanks-d1bb04 , sanks-d1bbg6 , sanks-d1bbs4 , sanks-d1bdb3 , sanks-d1bdq0 , sanks-d1bdy6 , sanks-d1bec0 , sanks-d1bes6 , sanks-d1bf19 , sanks-d1bfc5 , sanks-d1bfe7 , sanks-d1bfs7 , sanks-d1bg53 , sanks-d1bgd3 , sanks-d1bgi7 , sanks-d1bhh0 , sanks-d1biq2 , sanks-d1bjg2 , sanks-d1bkh6 , sanks-d1bb73

Title : Complete genome sequence of Cryptobacterium curtum type strain (12-3) - Mavrommatis_2009_Stand.Genomic.Sci_1_93

Author(s) : Mavrommatis K , Pukall R , Rohde C , Chen F , Sims D , Brettin T , Kuske C , Detter JC , Han C , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Ovchinnikova G , Pati A , Ivanova N , Chen A , Palaniappan K , Chain P , D'Haeseleer P , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Rohde M , Klenk HP , Kyrpides NC

Ref : Stand Genomic Sci , 1 :93 , 2009

Abstract : Mavrommatis_2009_Stand.Genomic.Sci_1_93

ESTHER : Mavrommatis_2009_Stand.Genomic.Sci_1_93

PubMedSearch : Mavrommatis_2009_Stand.Genomic.Sci_1_93

PubMedID: 21304644

Title : Complete genome sequence of Halogeometricum borinquense type strain (PR3) - Malfatti_2009_Stand.Genomic.Sci_1_150

Author(s) : Malfatti S , Tindall BJ , Schneider S , Fahnrich R , Lapidus A , Labuttii K , Copeland A , Glavina Del Rio T , Nolan M , Chen F , Lucas S , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Anderson I , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , D'Haeseleer P , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Chain P

Ref : Stand Genomic Sci , 1 :150 , 2009

Abstract : Malfatti_2009_Stand.Genomic.Sci_1_150

ESTHER : Malfatti_2009_Stand.Genomic.Sci_1_150

PubMedSearch : Malfatti_2009_Stand.Genomic.Sci_1_150

PubMedID: 21304651

Gene_locus related to this paper: 9eury-c1v4h6 , 9eury-c1v4p7 , 9eury-c1v4w8 , 9eury-c1v5h9 , 9eury-c1v5q3 , 9eury-c1v5t3 , 9eury-c1v7y6 , 9eury-c1v8n9 , 9eury-c1v568 , 9eury-c1vb62 , 9eury-c1vc42 , 9eury-c1vcz1 , 9eury-c1vd75 , 9eury-c1vdd8 , 9eury-c1ve13 , 9eury-c1ve51 , 9eury-c1vei1 , 9eury-c1vet7 , halbp-e4nkx5 , halbp-e4nra7 , halbp-e4nub0 , halbp-e4nmr3

Title : Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction - Anderson_2008_J.Bacteriol_190_2957

Author(s) : Anderson I , Rodriguez J , Susanti D , Porat I , Reich C , Ulrich LE , Elkins JG , Mavromatis K , Lykidis A , Kim E , Thompson LS , Nolan M , Land M , Copeland A , Lapidus A , Lucas S , Detter C , Zhulin IB , Olsen GJ , Whitman W , Mukhopadhyay B , Bristow J , Kyrpides N

Ref : Journal of Bacteriology , 190 :2957 , 2008

Abstract : Anderson_2008_J.Bacteriol_190_2957

ESTHER : Anderson_2008_J.Bacteriol_190_2957

PubMedSearch : Anderson_2008_J.Bacteriol_190_2957

PubMedID: 18263724

Gene_locus related to this paper: thepd-a1s004

Title : The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome - Sela_2008_Proc.Natl.Acad.Sci.U.S.A_105_18964

Author(s) : Sela DA , Chapman J , Adeuya A , Kim JH , Chen F , Whitehead TR , Lapidus A , Rokhsar DS , Lebrilla CB , German JB , Price NP , Richardson PM , Mills DA

Ref : Proc Natl Acad Sci U S A , 105 :18964 , 2008

Abstract : Sela_2008_Proc.Natl.Acad.Sci.U.S.A_105_18964

ESTHER : Sela_2008_Proc.Natl.Acad.Sci.U.S.A_105_18964

PubMedSearch : Sela_2008_Proc.Natl.Acad.Sci.U.S.A_105_18964

PubMedID: 19033196

Gene_locus related to this paper: bifli-c2gxu7 , biflo-BL0073 , biflo-BL0336 , biflo-BL0581 , biflo-BL0582 , biflo-BL0787 , biflo-BL0807 , biflo-BL1514 , biflo-PTRB , bifln-c2gtr2

Title : Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans - Sievert_2008_Appl.Environ.Microbiol_74_1145

Author(s) : Sievert SM , Scott KM , Klotz MG , Chain PS , Hauser LJ , Hemp J , Hugler M , Land M , Lapidus A , Larimer FW , Lucas S , Malfatti SA , Meyer F , Paulsen IT , Ren Q , Simon J

Ref : Applied Environmental Microbiology , 74 :1145 , 2008

Abstract : Sievert_2008_Appl.Environ.Microbiol_74_1145

ESTHER : Sievert_2008_Appl.Environ.Microbiol_74_1145

PubMedSearch : Sievert_2008_Appl.Environ.Microbiol_74_1145

PubMedID: 18065616

Gene_locus related to this paper: suldn-q30ua6 , suldn-q30rs9

Title : Extending the Bacillus cereus group genomics to putative food-borne pathogens of different toxicity - Lapidus_2008_Chem.Biol.Interact_171_236

Author(s) : Lapidus A , Goltsman E , Auger S , Galleron N , Segurens B , Dossat C , Land ML , Broussolle V , Brillard J , Guinebretiere MH , Sanchis V , Nguen-The C , Lereclus D , Richardson P , Wincker P , Weissenbach J , Ehrlich SD , Sorokin A

Ref : Chemico-Biological Interactions , 171 :236 , 2008

Abstract : Lapidus_2008_Chem.Biol.Interact_171_236

ESTHER : Lapidus_2008_Chem.Biol.Interact_171_236

PubMedSearch : Lapidus_2008_Chem.Biol.Interact_171_236

PubMedID: 17434157

Gene_locus related to this paper: bacwk-A9VF42 , bacan-BA0954 , bacan-BA5009 , bacan-DHBF , bacce-BC0192 , bacce-BC2141 , bacce-BC2171 , bacce-BC2458 , bacce-BC3133 , bacce-BC4862 , bacce-BC5130 , bacce-c2zq05 , bacce-c2zsv2 , bacce-lipP , bacce-PHAC , bacce-q2edm4 , bacce-q72yu1 , baccn-a7gmc0 , baccn-a7gmj8 , baccn-a7gnr6 , baccn-a7gpf9 , baccn-a7gpl4 , baccn-a7gpr3 , baccn-a7gqf9 , baccn-a7gr85 , baccn-a7gsc6 , baccn-a7gse0 , baccn-a7gt87 , baccn-a7gu34 , baccn-a7gu90 , baccn-a7guq6 , baccr-pepx , bacmy-c3aae7 , bactu-c3ice0 , bacwk-a9vg55 , bacwk-a9vgr5 , bacwk-a9vju9 , bacwk-a9vkh7 , bacwk-a9vm76 , bacwk-a9vql0 , bacwk-a9vqm8 , bacwk-a9vtw7 , bacwk-a9vv54 , baccn-a7gp74

Title : A korarchaeal genome reveals insights into the evolution of the Archaea - Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102

Author(s) : Elkins JG , Podar M , Graham DE , Makarova KS , Wolf Y , Randau L , Hedlund BP , Brochier-Armanet C , Kunin V , Anderson I , Lapidus A , Goltsman E , Barry K , Koonin EV , Hugenholtz P , Kyrpides N , Wanner G , Richardson P , Keller M , Stetter KO

Ref : Proc Natl Acad Sci U S A , 105 :8102 , 2008

Abstract : Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102

ESTHER : Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102

PubMedSearch : Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102

PubMedID: 18535141

Title : Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography - Normand_2007_Genome.Res_17_7

Author(s) : Normand P , Lapierre P , Tisa LS , Gogarten JP , Alloisio N , Bagnarol E , Bassi CA , Berry AM , Bickhart DM , Choisne N , Couloux A , Cournoyer B , Cruveiller S , Daubin V , Demange N , Francino MP , Goltsman E , Huang Y , Kopp OR , Labarre L , Lapidus A , Lavire C , Marechal J , Martinez M , Mastronunzio JE , Mullin BC , Niemann J , Pujic P , Rawnsley T , Rouy Z , Schenowitz C , Sellstedt A , Tavares F , Tomkins JP , Vallenet D , Valverde C , Wall LG , Wang Y , Medigue C , Benson DR

Ref : Genome Res , 17 :7 , 2007

Abstract : Normand_2007_Genome.Res_17_7

ESTHER : Normand_2007_Genome.Res_17_7

PubMedSearch : Normand_2007_Genome.Res_17_7

PubMedID: 17151343

Gene_locus related to this paper: frasn-a8leg3 , fraaa-q0rau9 , fraaa-q0rbj9 , fraaa-q0rc03 , fraaa-q0rc89 , fraaa-q0rci1 , fraaa-q0rdx4 , fraaa-q0ref4 , fraaa-q0rel4 , fraaa-q0req5 , fraaa-q0rev2 , fraaa-q0rfl4 , fraaa-q0rfz5 , fraaa-q0rhz6 , fraaa-q0rjm3 , fraaa-q0rjt2 , fraaa-q0rkm8 , fraaa-q0rkv5 , fraaa-q0rl43 , fraaa-q0rlp9 , fraaa-q0rm04 , fraaa-q0rmn2 , fraaa-q0rmz5 , fraaa-q0rqg7 , fraaa-q0rr69 , fraaa-q0rrm7 , fraaa-q0rs07 , fraaa-q0rt07 , fraaa-q0rt55 , fraaa-q0rt70 , fraaa-q0rt91 , fraaa-q0rtc4 , fraaa-q0rte4 , fraaa-q0rtv2 , fraaa-q0rum6 , frasc-q2j5v5 , frasc-q2j8e6 , frasc-q2jct6 , frasn-a8kx42 , frasn-a8kyp2 , frasn-A8L0F8 , frasn-a8l0g7 , frasn-a8l1j7 , frasn-a8l1t9 , frasn-a8l4h8 , frasn-a8l7f8 , frasn-a8l8i4 , frasn-a8l8k8 , frasn-a8l9e9 , frasn-a8l051 , frasn-a8l115 , frasn-a8l161 , frasn-a8l265 , frasn-a8l268 , frasn-a8l720 , frasn-a8l745 , frasn-a8l755 , frasn-a8l875 , frasn-a8lab3 , frasn-a8lag3 , frasn-a8lb99 , frasn-a8lbd8 , frasn-a8lbj7 , frasn-a8lbj8 , frasn-a8lby7 , frasn-a8ldb7 , frasn-a8ldd0 , frasn-a8le91 , frasn-a8leg6 , frasn-a8leq6 , frasn-a8let0 , frasn-a8lf43 , frasn-a8lfg3 , frasn-a8lfl1 , frasn-a8lgw1 , frasn-a8lgy1 , frasc-q2j553 , frasn-a8l2m3 , fraaa-q0rd38 , frasc-q2j6h2 , frasn-a8lfl3 , frasn-a8leg7 , frasn-a8l5b8 , fraaa-q0rgz4 , fraaa-q0rtv3 , frasn-a8le98 , frasn-a8leb4

Title : Patterns and implications of gene gain and loss in the evolution of Prochlorococcus - Kettler_2007_PLoS.Genet_3_e231

Author(s) : Kettler GC , Martiny AC , Huang K , Zucker J , Coleman ML , Rodrigue S , Chen F , Lapidus A , Ferriera S , Johnson J , Steglich C , Church GM , Richardson P , Chisholm SW

Ref : PLoS Genet , 3 :e231 , 2007

Abstract : Kettler_2007_PLoS.Genet_3_e231

ESTHER : Kettler_2007_PLoS.Genet_3_e231

PubMedSearch : Kettler_2007_PLoS.Genet_3_e231

PubMedID: 18159947

Gene_locus related to this paper: prom1-a2c3n7 , prom1-a2c150 , prom1-a2c179 , prom2-a8g5b6 , prom2-a8g5t3 , prom3-a2c804 , prom3-a2cas9 , prom4-a9b9z4 , prom4-a9bb64 , prom4-a9bbd7 , prom5-a2bvt3 , prom5-a2bx34 , prom9-q31br4 , prom9-q31ch4 , promr-b9p0y6 , promm-q7v6l0 , promm-q7v8g2 , proms-a2brm5 , proms-a2bs42 , promt-q46jt5 , promt-q46jy1 , promt-q46kg4 , prom0-a3pbw6 , proms-a2bq73 , prom3-a2cay5 , prom5-a2buz4 , prom2-a8g328 , prom3-a2ce38

Title : Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX - Lykidis_2007_J.Bacteriol_189_2477

Author(s) : Lykidis A , Mavromatis K , Ivanova N , Anderson I , Land M , DiBartolo G , Martinez M , Lapidus A , Lucas S , Copeland A , Richardson P , Wilson DB , Kyrpides N

Ref : Journal of Bacteriology , 189 :2477 , 2007

Abstract : Lykidis_2007_J.Bacteriol_189_2477

ESTHER : Lykidis_2007_J.Bacteriol_189_2477

PubMedSearch : Lykidis_2007_J.Bacteriol_189_2477

PubMedID: 17209016

Gene_locus related to this paper: thefu-q6a0i3 , thefy-q47l17 , thefy-q47p38 , thefy-q47pm5

Title : The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2 - Scott_2006_PLoS.Biol_4_e383

Author(s) : Scott KM , Sievert SM , Abril FN , Ball LA , Barrett CJ , Blake RA , Boller AJ , Chain PS , Clark JA , Davis CR , Detter C , Do KF , Dobrinski KP , Faza BI , Fitzpatrick KA , Freyermuth SK , Harmer TL , Hauser LJ , Hugler M , Kerfeld CA , Klotz MG , Kong WW , Land M , Lapidus A , Larimer FW , Longo DL , Lucas S , Malfatti SA , Massey SE , Martin DD , McCuddin Z , Meyer F , Moore JL , Ocampo LH, Jr. , Paul JH , Paulsen IT , Reep DK , Ren Q , Ross RL , Sato PY , Thomas P , Tinkham LE , Zeruth GT

Ref : PLoS Biol , 4 :e383 , 2006

Abstract : Scott_2006_PLoS.Biol_4_e383

ESTHER : Scott_2006_PLoS.Biol_4_e383

PubMedSearch : Scott_2006_PLoS.Biol_4_e383

PubMedID: 17105352

Gene_locus related to this paper: thicr-q31fm2 , thicr-q31ih5

Title : The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes - Maeder_2006_J.Bacteriol_188_7922

Author(s) : Maeder DL , Anderson I , Brettin TS , Bruce DC , Gilna P , Han CS , Lapidus A , Metcalf WW , Saunders E , Tapia R , Sowers KR

Ref : Journal of Bacteriology , 188 :7922 , 2006

Abstract : Maeder_2006_J.Bacteriol_188_7922

ESTHER : Maeder_2006_J.Bacteriol_188_7922

PubMedSearch : Maeder_2006_J.Bacteriol_188_7922

PubMedID: 16980466

Gene_locus related to this paper: metbf-q46ca9 , metbf-q469u5

Title : Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000 - Feil_2005_Proc.Natl.Acad.Sci.U.S.A_102_11064

Author(s) : Feil H , Feil WS , Chain P , Larimer F , DiBartolo G , Copeland A , Lykidis A , Trong S , Nolan M , Goltsman E , Thiel J , Malfatti S , Loper JE , Lapidus A , Detter JC , Land M , Richardson PM , Kyrpides NC , Ivanova N , Lindow SE

Ref : Proc Natl Acad Sci U S A , 102 :11064 , 2005

Abstract : Feil_2005_Proc.Natl.Acad.Sci.U.S.A_102_11064

ESTHER : Feil_2005_Proc.Natl.Acad.Sci.U.S.A_102_11064

PubMedSearch : Feil_2005_Proc.Natl.Acad.Sci.U.S.A_102_11064

PubMedID: 16043691

Gene_locus related to this paper: psesm-METX , psesm-q87y20 , psesm-q889k3 , psesy-PIP , psesy-PSPTO2134 , psesy-PSPTO3135 , psesy-SYLD , psesy-SYPC , psesy-SYRE , pseu2-q4zlt8 , pseu2-q4zm40 , pseu2-q4zmb0 , pseu2-q4zmc0 , pseu2-q4zmh2 , pseu2-q4zmw4 , pseu2-q4zn59 , pseu2-q4znb2 , pseu2-q4znm5 , pseu2-q4zpb0 , pseu2-q4zph7 , pseu2-q4zpw6 , pseu2-q4zq18 , pseu2-q4zq29 , pseu2-q4zqk3 , pseu2-q4zr46 , pseu2-q4zrk3 , pseu2-q4zrq0 , pseu2-q4zrr1 , pseu2-q4zrt9 , pseu2-q4zs33 , pseu2-q4zs84 , pseu2-q4zs88 , pseu2-q4zsh3 , pseu2-q4zt45 , pseu2-q4zt74 , pseu2-q4zta6 , pseu2-q4zte9 , pseu2-q4zts5 , pseu2-q4zun8 , pseu2-q4zuv2 , pseu2-q4zuw1 , pseu2-q4zv19 , pseu2-q4zv57 , pseu2-q4zvi1 , pseu2-q4zvi2 , pseu2-q4zw50 , pseu2-q4zwq3 , pseu2-q4zwv7 , pseu2-q4zxj5 , pseu2-q4zxs0 , pseu2-q4zz02 , pseu2-q4zzm1 , pseu2-q4zzm4 , pseu2-q500r7 , pseu2-q4zqx8

Title : The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode - Foster_2005_PLoS.Biol_3_e121

Author(s) : Foster J , Ganatra M , Kamal I , Ware J , Makarova K , Ivanova N , Bhattacharyya A , Kapatral V , Kumar S , Posfai J , Vincze T , Ingram J , Moran L , Lapidus A , Omelchenko M , Kyrpides N , Ghedin E , Wang S , Goltsman E , Joukov V , Ostrovskaya O , Tsukerman K , Mazur M , Comb D , Koonin E , Slatko B

Ref : PLoS Biol , 3 :e121 , 2005

Abstract : Foster_2005_PLoS.Biol_3_e121

ESTHER : Foster_2005_PLoS.Biol_3_e121

PubMedSearch : Foster_2005_PLoS.Biol_3_e121

PubMedID: 15780005

Gene_locus related to this paper: woltr-q5gs90 , woltr-q5gtr0

Title : Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus - Bolotin_2004_Nat.Biotechnol_22_1554

Author(s) : Bolotin A , Quinquis B , Renault P , Sorokin A , Ehrlich SD , Kulakauskas S , Lapidus A , Goltsman E , Mazur M , Pusch GD , Fonstein M , Overbeek R , Kyprides N , Purnelle B , Prozzi D , Ngui K , Masuy D , Hancy F , Burteau S , Boutry M , Delcour J , Goffeau A , Hols P

Ref : Nat Biotechnol , 22 :1554 , 2004

Abstract : Bolotin_2004_Nat.Biotechnol_22_1554

ESTHER : Bolotin_2004_Nat.Biotechnol_22_1554

PubMedSearch : Bolotin_2004_Nat.Biotechnol_22_1554

PubMedID: 15543133

Gene_locus related to this paper: strt1-q5lz16 , strt1-q5lza1 , strt2-q5m420 , strtr-pepx

Title : Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species - Rey_2004_Genome.Biol_5_R77

Author(s) : Rey MW , Ramaiya P , Nelson BA , Brody-Karpin SD , Zaretsky EJ , Tang M , Lopez de Leon A , Xiang H , Gusti V , Clausen IG , Olsen PB , Rasmussen MD , Andersen JT , Jorgensen PL , Larsen TS , Sorokin A , Bolotin A , Lapidus A , Galleron N , Ehrlich SD , Berka RM

Ref : Genome Biol , 5 :R77 , 2004

Abstract : Rey_2004_Genome.Biol_5_R77

ESTHER : Rey_2004_Genome.Biol_5_R77

PubMedSearch : Rey_2004_Genome.Biol_5_R77

PubMedID: 15461803

Gene_locus related to this paper: bacld-q62u01 , bacld-Q65L73 , bacld-q62yz9 , bacld-q65dz7 , bacld-q65e02 , bacld-q65eq1 , bacld-q65fc5 , bacld-q65fg2 , bacld-q65fg3 , bacld-q65fk9 , bacld-q65ft3 , bacld-q65fw3 , bacld-q65fy2 , bacld-q65gx2 , bacld-q65hn8 , bacld-q65hr4 , bacld-q65if8 , bacld-q65iy4 , bacld-q65j72 , bacld-q65le0 , bacld-q65ly2 , bacld-q65m29 , bacld-q65mg8 , bacld-q65my7 , bacld-q65n63 , bacld-q65nk2 , bacld-q65nm7 , bacli-LICC

Title : Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis. -

Author(s) : Ivanova N , Sorokin A , Anderson I , Galleron N , Candelon B , Kapatral V , Bhattacharyya A , Reznik G , Mikhailova N , Lapidus A , Chu L , Mazur M , Goltsman E , Larsen N , D'Souza M , Walunas T , Grechkin Y , Pusch G , Haselkorn R , Fonstein M , Ehrlich SD , Overbeek R , Kyrpides N

Ref : Nature , 423 :87 , 2003

PubMedID: 12721630

Gene_locus related to this paper: bacce-BC0192 , bacce-BC0303 , bacce-BC0968 , bacce-BC0971 , bacce-BC1027 , bacce-BC1226 , bacce-BC1677 , bacce-BC1693 , bacce-BC1788 , bacce-BC1813 , bacce-BC1954 , bacce-BC2013 , bacce-BC2083 , bacce-BC2141 , bacce-BC2171 , bacce-BC2337 , bacce-BC2456 , bacce-BC2458 , bacce-BC2519 , bacce-BC2733 , bacce-BC2743 , bacce-BC2867 , bacce-BC3044 , bacce-BC3122 , bacce-BC3133 , bacce-BC3135 , bacce-BC3159 , bacce-BC3277 , bacce-BC3312 , bacce-BC3642 , bacce-BC3734 , bacce-BC3746 , bacce-BC4102 , bacce-BC4106 , bacce-BC4116 , bacce-BC4345 , bacce-BC4663 , bacce-BC4730 , bacce-BC4753 , bacce-BC4854 , bacce-BC4862 , bacce-BC4904 , bacce-BC5130 , bacce-PHAC , bacce-q72yu1 , baccr-pepx , baccr-q81gm3

Title : The complete genome sequence of the gram-positive bacterium Bacillus subtilis - Kunst_1997_Nature_390_249

Author(s) : Kunst F , Ogasawara N , Moszer I , Albertini AM , Alloni G , Azevedo V , Bertero MG , Bessieres P , Bolotin A , Borchert S , Borriss R , Boursier L , Brans A , Braun M , Brignell SC , Bron S , Brouillet S , Bruschi CV , Caldwell B , Capuano V , Carter NM , Choi SK , Cordani JJ , Connerton IF , Cummings NJ , Daniel RA , Denziot F , Devine KM , Dusterhoft A , Ehrlich SD , Emmerson PT , Entian KD , Errington J , Fabret C , Ferrari E , Foulger D , Fritz C , Fujita M , Fujita Y , Fuma S , Galizzi A , Galleron N , Ghim SY , Glaser P , Goffeau A , Golightly EJ , Grandi G , Guiseppi G , Guy BJ , Haga K , Haiech J , Harwood CR , Henaut A , Hilbert H , Holsappel S , Hosono S , Hullo MF , Itaya M , Jones L , Joris B , Karamata D , Kasahara Y , Klaerr-Blanchard M , Klein C , Kobayashi Y , Koetter P , Koningstein G , Krogh S , Kumano M , Kurita K , Lapidus A , Lardinois S , Lauber J , Lazarevic V , Lee SM , Levine A , Liu H , Masuda S , Mauel C , Medigue C , Medina N , Mellado RP , Mizuno M , Moestl D , Nakai S , Noback M , Noone D , O'Reilly M , Ogawa K , Ogiwara A , Oudega B , Park SH , Parro V , Pohl TM , Portelle D , Porwollik S , Prescott AM , Presecan E , Pujic P , Purnelle B , Rapoport G , Rey M , Reynolds S , Rieger M , Rivolta C , Rocha E , Roche B , Rose M , Sadaie Y , Sato T , Scanlan E , Schleich S , Schroeter R , Scoffone F , Sekiguchi J , Sekowska A , Seror SJ , Serror P , Shin BS , Soldo B , Sorokin A , Tacconi E , Takagi T , Takahashi H , Takemaru K , Takeuchi M , Tamakoshi A , Tanaka T , Terpstra P , Togoni A , Tosato V , Uchiyama S , Vandebol M , Vannier F , Vassarotti A , Viari A , Wambutt R , Wedler H , Weitzenegger T , Winters P , Wipat A , Yamamoto H , Yamane K , Yasumoto K , Yata K , Yoshida K , Yoshikawa HF , Zumstein E , Yoshikawa H , Danchin A

Ref : Nature , 390 :249 , 1997

Abstract : Kunst_1997_Nature_390_249

ESTHER : Kunst_1997_Nature_390_249

PubMedSearch : Kunst_1997_Nature_390_249

PubMedID: 9384377

Gene_locus related to this paper: bacsu-CAH , bacsu-cbxnp , bacsu-lip , bacsu-LIPB , bacsu-PKSR , bacsu-pnbae , bacsu-PPSE , bacsu-srf4 , bacsu-srfac , bacsu-YBAC , bacsu-YBDG , bacsu-ybfk , bacsu-ycgS , bacsu-yczh , bacsu-YDEN , bacsu-ydjp , bacsu-yfhM , bacsu-yisY , bacsu-YITV , bacsu-yjau , bacsu-YJCH , bacsu-MHQD , bacsu-yqjl , bacsu-yqkd , bacsu-YRAK , bacsu-YTAP , bacsu-YTMA , bacsu-YTPA , bacsu-ytxm , bacsu-yugF , bacsu-YUII , bacsu-YUKL , bacsu-YVAK , bacsu-YvaM , bacsu-RsbQ

Title : Sequencing and functional annotation of the Bacillus subtilis genes in the 200 kb rrnB-dnaB region. -

Author(s) : Lapidus A , Galleron N , Sorokin A , Ehrlich SD

Ref : Microbiology , 143 :3431 , 1997

PubMedID: 9387221

Gene_locus related to this paper: bacsu-YTPA , bacsu-ytxm

Lapidus A

General

References (174)

Lapidus A

General

References (174)

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2. Comparative genomics of biotechnologically important yeasts

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4. Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage

5. Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds

6. Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift

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11. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

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13. Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T))

14. Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

15. Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney

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21. Complete genome sequence of Serratia plymuthica strain AS12

22. Complete genome sequence of the plant-associated Serratia plymuthica strain AS13

23. Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T))

24. The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction

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47. Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190

48. The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi

49. Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614

50. Complete genome sequence of Thioalkalivibrio sulfidophilus HL-EbGr7

51. Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242)

52. Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus

53. Comparative genomics of xylose-fermenting fungi for enhanced biofuel production

54. Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems

55. Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010

56. Complete genome sequence of Weeksella virosa type strain (9751)

57. Complete genome sequence of Haliscomenobacter hydrossis type strain (O)

58. Complete genome sequence of Truepera radiovictrix type strain (RQ-24)

59. Complete genome sequence of Oceanithermus profundus type strain (506)

60. Complete genome sequence of Tsukamurella paurometabola type strain (no. 33)

61. Complete genome sequence of Paludibacter propionicigenes type strain (WB4)

62. Complete genome sequence of Bacteroides helcogenes type strain (P 36-108)

63. Complete genome sequence of Desulfobulbus propionicus type strain (1pr3)

64. Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T))

65. Complete genome sequence of Cellulophaga algicola type strain (IC166)

66. The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri

67. Complete genome sequence of Cellulophaga lytica type strain (LIM-21)

68. Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7

69. Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139)

70. Complete genome sequence of Mahella australiensis type strain (50-1 BON)

71. Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus

72. Complete genome sequence of Intrasporangium calvum type strain (7 KIP)

73. Complete genome sequence of Streptosporangium roseum type strain (NI 9100)

74. Complete genome sequence of Arcanobacterium haemolyticum type strain (11018)

75. Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228)

76. Complete genome sequence of Acidaminococcus fermentans type strain (VR4)

77. Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1)

78. Complete genome sequence of Arcobacter nitrofigilis type strain (CI)